| AtomID typedef | core::scoring::Energies | |
| AtomID_Mask typedef | core::scoring::Energies | |
| BasicDataCache typedef | core::scoring::Energies | |
| clear() | core::scoring::Energies | |
| clear_energies() | core::scoring::Energies | |
| clone() const override | core::scoring::solid_surface::SurfaceEnergies | virtual |
| context_graph(scoring::ContextGraphType type) const | core::scoring::Energies | |
| context_graph(scoring::ContextGraphType type) | core::scoring::Energies | |
| context_graphs() const | core::scoring::Energies | protected |
| data() const | core::scoring::Energies | inline |
| data() | core::scoring::Energies | inline |
| discard_conformation_domain_map() const | core::scoring::Energies | |
| domain_map(int const pos) const | core::scoring::Energies | inline |
| domain_map() const | core::scoring::Energies | inline |
| domain_map_during_minimization(int const pos) const | core::scoring::Energies | inlineprotected |
| DomainMap typedef | core::scoring::Energies | |
| Energies() | core::scoring::Energies | |
| Energies(Energies const &src) | core::scoring::Energies | |
| energies_updated() const | core::scoring::Energies | inline |
| energy_graph() const | core::scoring::Energies | |
| energy_graph() | core::scoring::Energies | |
| energy_graph_no_state_check() | core::scoring::Energies | protected |
| EnergyGraph typedef | core::scoring::Energies | |
| EnergyMap typedef | core::scoring::Energies | |
| fill_point_graph(pose::Pose const &pose, conformation::PointGraphOP pg) const override | core::scoring::solid_surface::SurfaceEnergies | privatevirtual |
| finalized_energies() const | core::scoring::Energies | inline |
| finalized_energies() | core::scoring::Energies | inline |
| get_scorefxn_info() const | core::scoring::Energies | inline |
| Graph typedef | core::scoring::Energies | |
| is_surface_ | core::scoring::solid_surface::SurfaceEnergies | private |
| long_range_container(methods::LongRangeEnergyType) const | core::scoring::Energies | |
| max_context_neighbor_cutoff() const | core::scoring::Energies | protected |
| minimization_graph() | core::scoring::Energies | |
| minimization_graph() const | core::scoring::Energies | |
| nblist(EnergiesCacheableDataType::Enum const &type) const | core::scoring::Energies | |
| neighbor_cutoff_ | core::scoring::solid_surface::SurfaceEnergies | mutableprivate |
| NeighborList typedef | core::scoring::Energies | |
| non_surface_ranges_ | core::scoring::solid_surface::SurfaceEnergies | private |
| nonconst_long_range_container(methods::LongRangeEnergyType) | core::scoring::Energies | |
| onebody_energies(int const seqpos) const | core::scoring::Energies | inline |
| onebody_energies(int const seqpos) | core::scoring::Energies | inline |
| operator=(Energies const &rhs) override | core::scoring::solid_surface::SurfaceEnergies | virtual |
| owner() const | core::scoring::Energies | protected |
| parent typedef | core::scoring::solid_surface::SurfaceEnergies | |
| point_graph() | core::scoring::Energies | protected |
| require_context_graph(scoring::ContextGraphType) const | core::scoring::Energies | |
| required_context_graphs() const | core::scoring::Energies | protected |
| res_moved(int const seqpos) const | core::scoring::Energies | |
| reset_nblist() | core::scoring::Energies | |
| reset_res_moved(int const seqpos) | core::scoring::Energies | |
| reset_surface_residue_information() | core::scoring::solid_surface::SurfaceEnergies | |
| residue_is_surface(Size seqpos) const | core::scoring::solid_surface::SurfaceEnergies | |
| residue_neighbors_updated() const | core::scoring::Energies | inline |
| residue_total_energies(int const seqpos) const | core::scoring::Energies | inline |
| residue_total_energy(int const seqpos) const | core::scoring::Energies | inline |
| same_type_as_me(Energies const &other, bool recurse=true) const override | core::scoring::solid_surface::SurfaceEnergies | virtual |
| ScoreFunctionInfo typedef | core::scoring::Energies | |
| ScoreType typedef | core::scoring::Energies | |
| scoring() const | core::scoring::Energies | inline |
| scoring_begin(scoring::ScoreFunction const &sfxn, pose::Pose const &pose) | core::scoring::Energies | |
| scoring_end(scoring::ScoreFunction const &scorefxn) | core::scoring::Energies | |
| set_long_range_container(methods::LongRangeEnergyType, LREnergyContainerOP) | core::scoring::Energies | |
| set_max_context_neighbor_cutoff(Real val) const | core::scoring::Energies | protected |
| set_minimization_graph(MinimizationGraphOP) | core::scoring::Energies | |
| set_nblist(EnergiesCacheableDataType::Enum const &type, scoring::NeighborListOP nblist_in) | core::scoring::Energies | |
| set_owner(pose::Pose *owner) | core::scoring::Energies | |
| set_residue_range_not_surface(Size seqpos_begin, Size seqpos_end) | core::scoring::solid_surface::SurfaceEnergies | |
| set_total_residue(Size total_residue) | core::scoring::solid_surface::SurfaceEnergies | |
| set_use_nblist(pose::Pose const &pose, DomainMap const &domain_map_in, bool const use_nblist_auto_update) | core::scoring::Energies | |
| show(std::ostream &out) const | core::scoring::Energies | |
| show(std::ostream &out, Size res) const | core::scoring::Energies | |
| show() const | core::scoring::Energies | |
| show(Size res) const | core::scoring::Energies | |
| show_total_headers(std::ostream &out) const | core::scoring::Energies | |
| show_totals(std::ostream &out) const | core::scoring::Energies | |
| size() const | core::scoring::Energies | inline |
| structure_has_moved(Size const nres) const | core::scoring::Energies | |
| SurfaceEnergies() | core::scoring::solid_surface::SurfaceEnergies | |
| SurfaceEnergies(SurfaceEnergies const &src) | core::scoring::solid_surface::SurfaceEnergies | |
| tenA_neighbor_graph() const | core::scoring::Energies | |
| tenA_neighbor_graph() | core::scoring::Energies | |
| total_energies() const | core::scoring::Energies | |
| total_energies() | core::scoring::Energies | |
| total_energy() const | core::scoring::Energies | inline |
| total_energy() | core::scoring::Energies | inline |
| total_residue_ | core::scoring::solid_surface::SurfaceEnergies | private |
| twelveA_neighbor_graph() const | core::scoring::Energies | |
| twelveA_neighbor_graph() | core::scoring::Energies | |
| update_residue_neighbors(DomainMap const &domain_map_in, pose::Pose const &pose) | core::scoring::Energies | |
| use_nblist() const | core::scoring::Energies | inline |
| use_nblist_auto_update() const | core::scoring::Energies | inline |
| use_nblist_of_type(EnergiesCacheableDataType::Enum const &type) const | core::scoring::Energies | inline |
| weights() const | core::scoring::Energies | |
| weights(EnergyMap new_weights) | core::scoring::Energies | |
| ~Energies() override | core::scoring::Energies | |
| ~SurfaceEnergies() override | core::scoring::solid_surface::SurfaceEnergies | |