ConstrainToIdealMover.cc File Reference

Adds to your pose constraints suitable for idealization of bond lengths and angles. More...

#include <protocols/simple_moves/ConstrainToIdealMover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/rna/RNA_FittedTorsionInfo.hh>
#include <core/chemical/rna/util.hh>
#include <core/chemical/AtomType.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <numeric/conversions.hh>
#include <numeric/xyz.functions.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_moves

Functions
static basic::Tracer	TR ("protocols.simple_moves.ConstrainToIdealMover")
core::Size	protocols::simple_moves::check_if_proton_chi_atom (core::chemical::ResidueType const &rsd_type, core::Size const j)
core::Size	protocols::simple_moves::check_if_proton_chi_atom (core::pose::Pose const &pose, core::Size const i, core::Size const j)
void	protocols::simple_moves::apply_ideal_coordinates_for_alternative_pucker (core::pose::Pose const &pose, core::pose::Pose &pose_reference)
void	protocols::simple_moves::setup_vary_rna_bond_geometry (core::kinematics::MoveMap &mm, core::pose::Pose &pose, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::scoring::ScoreType score_type)
void	protocols::simple_moves::setup_vary_polar_hydrogen_geometry (core::kinematics::MoveMap &mm, core::pose::Pose &pose, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map)

Detailed Description

Adds to your pose constraints suitable for idealization of bond lengths and angles.

Author

Steven Lewis (smlew.nosp@m.i@gm.nosp@m.ail.c.nosp@m.om); Rhiju Das

Function Documentation

static basic::Tracer TR ( "protocols.simple_moves.ConstrainToIdealMover"  )

static