RemodelLigandHandler.cc File Reference

#include <protocols/forge/remodel/RemodelLigandHandler.hh>
#include <protocols/forge/remodel/RemodelRotamerLinks.hh>
#include <protocols/forge/methods/util.hh>
#include <basic/Tracer.hh>
#include <basic/MetricValue.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/disulfides/DisulfideMatchingPotential.hh>
#include <core/util/disulfide_util.hh>
#include <core/conformation/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/symmetry/util.hh>
#include <core/io/Remarks.hh>
#include <core/pose/util.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/rotamer_set/RotamerLinks.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/remodel.OptionKeys.gen.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/pose_metric_calculators/NeighborhoodByDistanceCalculator.hh>
#include <core/pack/task/ResfileReader.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/constraints_additional/BindingSiteConstraint.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <Eigen/Dense>
#include <iostream>
#include <cmath>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::forge
	protocols::forge::remodel

Functions
static basic::Tracer	protocols::forge::remodel::TR ("protocols.forge.remodel.RemodelLigandHandler")