core::kinematics::jacobian Namespace Reference

Classes
class	JacobianStructure
	The JacobianStructure class is the upper-level wrapper of the Jacobian analysis of a protein's kinematics relations. More...
class	ModuleType1
	The ModuleType1 class covers the Jacobian analysis at the lower-level for type-1 systems, which have internal DoFs that can be organized as three sets of two torsion angles with intersecting axes. More...
class	SeriesJacobians
	The SeriesJacobians class is the mid-level of the Jacobian analysis of a protein's kinematics relations. More...

Typedefs
using	JacobianStructureOP = utility::pointer::shared_ptr< JacobianStructure >
using	JacobianStructureCOP = utility::pointer::shared_ptr< JacobianStructure const >
using	ModuleType1OP = utility::pointer::shared_ptr< ModuleType1 >
using	ModuleType1COP = utility::pointer::shared_ptr< ModuleType1 const >
using	SeriesJacobiansOP = utility::pointer::shared_ptr< SeriesJacobians >
using	SeriesJacobiansCOP = utility::pointer::shared_ptr< SeriesJacobians const >

Enumerations
enum	SeriesJacobianTypeEnum { SeriesJacobianTypeEnum::CANONICAL_AA = 1, SeriesJacobianTypeEnum::NONCANONICAL_AA, SeriesJacobianTypeEnum::num_types = NONCANONICAL_AA }
	List of supported residue types in the loop that is to be represented by a series Jacobian. More...

Typedef Documentation

using core::kinematics::jacobian::JacobianStructureCOP = typedef utility::pointer::shared_ptr< JacobianStructure const >

using core::kinematics::jacobian::JacobianStructureOP = typedef utility::pointer::shared_ptr< JacobianStructure >

using core::kinematics::jacobian::ModuleType1COP = typedef utility::pointer::shared_ptr< ModuleType1 const >

using core::kinematics::jacobian::ModuleType1OP = typedef utility::pointer::shared_ptr< ModuleType1 >

using core::kinematics::jacobian::SeriesJacobiansCOP = typedef utility::pointer::shared_ptr< SeriesJacobians const >

using core::kinematics::jacobian::SeriesJacobiansOP = typedef utility::pointer::shared_ptr< SeriesJacobians >

Enumeration Type Documentation

enum core::kinematics::jacobian::SeriesJacobianTypeEnum

strong

List of supported residue types in the loop that is to be represented by a series Jacobian.

Enumerator
CANONICAL_AA
NONCANONICAL_AA
num_types