| _static_type_name() | core::fragment::Frame | static |
| add_fragment(FragDataCOP new_frag) | core::fragment::Frame | |
| add_fragment(FragDataCOPs new_frags) | core::fragment::Frame | |
| align(core::id::SequenceMapping const &map) | core::fragment::Frame | virtual |
| apply(kinematics::MoveMap const &, core::Size frag_num, pose::Pose &pose) const | core::fragment::Frame | |
| apply(core::Size frag_num, pose::Pose &pose) const | core::fragment::Frame | |
| apply_ss(kinematics::MoveMap const &, core::Size frag_num, std::string &ss) const | core::fragment::Frame | |
| cache(std::string tag, BaseCacheUnitOP const &new_cache) const | core::fragment::Frame | |
| cache_ | core::fragment::Frame | mutableprivate |
| CacheMap typedef | core::fragment::Frame | private |
| clear() | core::fragment::Frame | |
| clone() const | core::fragment::Frame | virtual |
| clone_cache_data(Frame const &source, core::Size sid, core::Size nid) | core::fragment::Frame | |
| clone_with_frags() const | core::fragment::Frame | virtual |
| clone_with_template() | core::fragment::Frame | virtual |
| contains_seqpos(core::Size seqpos) const | core::fragment::Frame | |
| end() const | core::fragment::Frame | |
| end_ | core::fragment::Frame | mutableprivate |
| frag_id(core::Size frag_num) const | core::fragment::Frame | |
| frag_list_ | core::fragment::Frame | private |
| fragment(core::Size frag_num) const | core::fragment::Frame | |
| fragment_as_pose(core::Size frag_num, pose::Pose &pose, chemical::ResidueTypeSetCAP restype_set) const | core::fragment::Frame | |
| fragment_ptr(core::Size frag_num) const | core::fragment::Frame | |
| Frame() | core::fragment::Frame | |
| Frame(core::Size begin, core::Size end, core::Size nr_res) | core::fragment::Frame | |
| Frame(core::Size start, core::Size length) | core::fragment::Frame | |
| Frame(core::Size start) | core::fragment::Frame | |
| Frame(core::Size start, FragDataCOP const &frag1) | core::fragment::Frame | |
| Frame(core::Size start, core::Size length, SingleResidueFragDataOP srfd) | core::fragment::Frame | |
| generate_sub_frame(Size length, Size start=1) const | core::fragment::Frame | |
| init_length(core::Size start, core::Size end, core::Size length) | core::fragment::Frame | protected |
| is_applicable(kinematics::MoveMap const &) const | core::fragment::Frame | |
| is_compatible(FragDataCOP new_frag) const | core::fragment::Frame | protected |
| is_continuous() const | core::fragment::Frame | virtual |
| is_mergeable(Frame const &other) const | core::fragment::Frame | |
| is_valid() const | core::fragment::Frame | |
| length() const | core::fragment::Frame | |
| merge(Frame const &other) | core::fragment::Frame | |
| moves_residue(core::Size pos) const | core::fragment::Frame | virtual |
| nr_frags() const | core::fragment::Frame | |
| nr_res_ | core::fragment::Frame | mutableprivate |
| nr_res_affected(kinematics::MoveMap const &mm) const | core::fragment::Frame | |
| read(std::istream &in) | core::fragment::Frame | virtual |
| seqpos(core::Size intra_pos) const | core::fragment::Frame | virtual |
| shift_by(int offset) | core::fragment::Frame | virtual |
| shift_to(core::Size setting) | core::fragment::Frame | virtual |
| show(std::ostream &out) const | core::fragment::Frame | virtual |
| show_classic(std::ostream &out) const | core::fragment::Frame | virtual |
| show_fragments(std::ostream &out) const | core::fragment::Frame | protectedvirtual |
| show_header(std::ostream &out) const | core::fragment::Frame | virtual |
| start() const | core::fragment::Frame | |
| start_ | core::fragment::Frame | private |
| steal(pose::Pose const &pose) | core::fragment::Frame | |
| stop() const | core::fragment::Frame | |
| type() const | core::fragment::Frame | virtual |
| ~Frame() override | core::fragment::Frame | |
1.8.7