| all_dof_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| applied_fullatom_pert_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| apply(core::pose::Pose &pose_in) override | protocols::ub_e2c::ubi_e2c_modeler | virtual |
| assign_CSPs(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| assign_non_CSPs(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| CA | protocols::ub_e2c::ubi_e2c_modeler | private |
| calc_interaction_energy(const core::pose::Pose &pose_in, bool dimer=true) | protocols::ub_e2c::ubi_e2c_modeler | |
| calc_Lrmsd(const core::pose::Pose &pose_in, const core::pose::Pose &native_pose, core::Size ubiquitin) | protocols::ub_e2c::ubi_e2c_modeler | |
| cen_constraint_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| cen_vdw_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| centroid_allowed_CSP_fraction_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| centroid_CSP_weight_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| centroid_filter(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| centroid_mode_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| centroid_non_CSP_weight_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::ub_e2c::ubi_e2c_modeler | virtual |
| compute_swap_trim_CSPs() | protocols::ub_e2c::ubi_e2c_modeler | private |
| compute_trim_CSPs() | protocols::ub_e2c::ubi_e2c_modeler | private |
| cov_bond_only_flag_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| create() | protocols::moves::Mover | virtual |
| CSP_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| CSP_fraction(const core::pose::Pose &pose_in, bool non_CSP=false, bool trim=false, bool swap=false) | protocols::ub_e2c::ubi_e2c_modeler | |
| CSP_swap_trim_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| CSP_trim_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_48_lys_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_75g_mtsl_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_ctr_of_mass_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_trim_ctr_mass_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| d77_trim_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dock_lowres_cst_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dock_lowres_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dockfa_cst_min_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dockfa_cst_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dockfa_min_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| dockfa_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| e2_ctr_of_mass_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| e2_d77_jump_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| e2_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| e2_k48r_jump_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| evaluate_native(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| flex_cter_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| flex_cter_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| full_constraint_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| fullatom_allowed_CSP_fraction_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| fullatom_constraint_cutoff_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| fullatom_CSP_weight_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| fullatom_filter(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| fullatom_mode_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| fullatom_non_CSP_weight_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::ub_e2c::ubi_e2c_modeler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| higher_d77_pert_mode_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_all_dof_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_d77_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_d77_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| init_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_flex_cter_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_k48r_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_k48r_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| init_monoub_all_dof_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_monoub_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_monoub_flex_cter_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| init_task_factory_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| initial_cter_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| initial_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| initial_repack(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| k48r_48_lys_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_48k_mtsl_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_ctr_of_mass_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_swap_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| k48r_trim_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| lowres_cst_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| lowres_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| max_k48_cter_dist_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| max_repeats_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| min_tolerance_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| min_type_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_all_dof_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_apply(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_assign_CSPs(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_calc_interaction_energy(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_calc_Lrmsd(const core::pose::Pose &pose_in, const core::pose::Pose &native_pose) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_centroid_filter(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_centroid_mode_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_CSP_fraction(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_ctr_of_mass_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_docking_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_end_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_first_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_flex_cter_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_fold_tree(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_fullatom_filter(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_fullatom_mode_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_initial_cter_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_initial_perturbation(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_mode_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_setup_key_residues(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | private |
| monoub_setup_move_maps() | protocols::ub_e2c::ubi_e2c_modeler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| nb_list_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| non_CSP_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| non_CSP_swap_trim_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| non_CSP_trim_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| optimize_cov_bond(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| output_cen_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| output_full_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| pack_cst_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| pack_scorefxn_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| passed_centroid_filter_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| passed_fullatom_filter_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| refinement_mode_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| restore_cter(core::pose::Pose &pose_in, core::pose::Pose without_cter) | protocols::ub_e2c::ubi_e2c_modeler | |
| restrict_to_interfacial_loop_packing(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| score_map_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_default() | protocols::ub_e2c::ubi_e2c_modeler | |
| set_e2g2_diubi_fold_tree(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_complex_fold_tree(core::pose::Pose &pose_in, bool trim=false) | protocols::ub_e2c::ubi_e2c_modeler | |
| setup_key_residues(const core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| setup_move_maps() | protocols::ub_e2c::ubi_e2c_modeler | |
| setup_packer_task(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| setup_simple_fold_tree(core::Size jumppoint1, core::Size cutpoint, core::Size jumppoint2, core::Size nres, core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| temperature_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tf_ | protocols::ub_e2c::ubi_e2c_modeler | private |
| trim_cter(core::pose::Pose &pose_in) | protocols::ub_e2c::ubi_e2c_modeler | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ubi_e2c_modeler() | protocols::ub_e2c::ubi_e2c_modeler | |
| ~ubi_e2c_modeler() override | protocols::ub_e2c::ubi_e2c_modeler | |
1.8.7