protocols::denovo_design::components::HelixPairing Class Reference

#include <SegmentPairing.hh>

Inheritance diagram for protocols::denovo_design::components::HelixPairing:

Public Member Functions
	HelixPairing ()
	HelixPairing (SegmentName const &h1, SegmentName const &h2, bool const is_parallel)
	~HelixPairing () override
SegmentPairingOP	clone () const override
PairingType	type () const override
void	set_parallel (bool const parallel)
	Sets whether or not the helices are parallel (true) or antiparallel (false) More...
std::string	pairing_string (StructureData const &sd) const override
Public Member Functions inherited from protocols::denovo_design::components::SegmentPairing
	SegmentPairing ()
	SegmentPairing (SegmentNames const &paired_segments)
	~SegmentPairing () override
void	parse_my_tag (utility::tag::Tag const &tag)
bool	has_segment (std::string const &segment) const
SegmentNames const &	segments () const
void	set_segments (std::string const &segments_str)
void	set_segments (SegmentNames const &segments)

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
Static Public Member Functions inherited from protocols::denovo_design::components::SegmentPairing
static std::string	complex_type_name_for_pairing (std::string const &pairing_name)
static SegmentPairingOP	create (std::string const &type_name)
static std::string	get_strand_pairings (StructureData const &sd)
	Gets string for all strand pairings from a StructureData. More...
static std::string	get_helix_pairings (StructureData const &sd)
	Gets string for all helix pairings from a StructureData. More...
static std::string	get_hss_triplets (StructureData const &sd)
	Gets string for all helix-strand-strand triplets in a StructureData. More...
static ResiduePairs	get_strand_residue_pairs (StructureData const &sd)
	Gets pairs of residues involved in strand pairing. More...

Protected Member Functions
void	parse_tag (utility::tag::Tag const &tag) override
void	to_xml (utility::tag::Tag &tag) const override

Private Attributes
bool	parallel_

Additional Inherited Members
Public Types inherited from protocols::denovo_design::components::SegmentPairing
enum	PairingType { HELIX = 1, STRAND = 2, HELIX_SHEET = 3, UNKNOWN }
Static Public Attributes inherited from protocols::denovo_design::components::SegmentPairing
static std::string	TAG_NAME = "Pairing"
Static Protected Member Functions inherited from protocols::denovo_design::components::SegmentPairing
static void	add_common_xml_elements (utility::tag::XMLSchemaDefinition &xsd, std::string const &class_name, std::string const &description, utility::tag::AttributeList &attlist)

Constructor & Destructor Documentation

protocols::denovo_design::components::HelixPairing::HelixPairing

(

)

protocols::denovo_design::components::HelixPairing::HelixPairing	(	SegmentName const &	h1,
		SegmentName const &	h2,
		bool const	is_parallel
	)

References protocols::antibody::h1.

protocols::denovo_design::components::HelixPairing::~HelixPairing ( )

inlineoverride

Member Function Documentation

static std::string protocols::denovo_design::components::HelixPairing::class_name ( )

inlinestatic

Referenced by protocols::denovo_design::components::SegmentPairing::create(), protocols::denovo_design::architects::CompoundArchitect::define_pairing_group(), provide_xml_schema(), and protocols::denovo_design::components::SegmentPairing::type_to_str().

SegmentPairingOP protocols::denovo_design::components::HelixPairing::clone ( ) const

overridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

std::string protocols::denovo_design::components::HelixPairing::pairing_string ( StructureData const &  sd ) const

overridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

References protocols::antibody::h1, protocols::antibody::h2, parallel_, protocols::denovo_design::components::Segment::safe(), protocols::denovo_design::components::StructureData::segment(), protocols::denovo_design::components::SegmentPairing::segments(), and protocols::denovo_design::components::StructureData::ss().

void protocols::denovo_design::components::HelixPairing::parse_tag ( utility::tag::Tag const &  tag )

overrideprotectedvirtual

Implements protocols::denovo_design::components::SegmentPairing.

References protocols::denovo_design::components::SegmentPairing::segments(), and set_parallel().

void protocols::denovo_design::components::HelixPairing::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::denovo_design::components::SegmentPairing::add_common_xml_elements(), and class_name().

Referenced by protocols::denovo_design::architects::CompoundArchitect::define_pairing_group().

void protocols::denovo_design::components::HelixPairing::set_parallel ( bool const  parallel )

inline

Sets whether or not the helices are parallel (true) or antiparallel (false)

References parallel_.

Referenced by parse_tag().

void protocols::denovo_design::components::HelixPairing::to_xml ( utility::tag::Tag &  tag ) const

overrideprotectedvirtual

Implements protocols::denovo_design::components::SegmentPairing.

References parallel_.

PairingType protocols::denovo_design::components::HelixPairing::type ( ) const

inlineoverridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

References protocols::denovo_design::components::SegmentPairing::HELIX.

Member Data Documentation

bool protocols::denovo_design::components::HelixPairing::parallel_

private

Referenced by pairing_string(), set_parallel(), and to_xml().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/components/SegmentPairing.hh
• src/protocols/denovo_design/components/SegmentPairing.cc