protocols::hybridization::HybridizeFoldtreeDynamic Member List

This is the complete list of members for protocols::hybridization::HybridizeFoldtreeDynamic, including all inherited members.

add_overlapping_pair_chunks(core::Size const index, utility::vector1< core::Size > &cuts, utility::vector1< std::pair< core::Size, core::Size > > &jumps, std::set< core::Size > &rooted_chunk_indices)	protocols::hybridization::HybridizeFoldtreeDynamic	private
anchor_positions_	protocols::hybridization::HybridizeFoldtreeDynamic	private
choose_anchor_position(const protocols::loops::Loop &chunk) const	protocols::hybridization::HybridizeFoldtreeDynamic	private
choose_anchors()	protocols::hybridization::HybridizeFoldtreeDynamic	private
chunks_	protocols::hybridization::HybridizeFoldtreeDynamic	private
core_chunks_	protocols::hybridization::HybridizeFoldtreeDynamic	private
decide_cuts(core::pose::Pose &pose, core::Size n_residues)	protocols::hybridization::HybridizeFoldtreeDynamic	private
get_anchors()	protocols::hybridization::HybridizeFoldtreeDynamic	inline
get_core_chunk_index_from_position(core::Size const position, core::Size &index)	protocols::hybridization::HybridizeFoldtreeDynamic	private
get_pair_core_chunks(core::Size const chunk_index, utility::vector1< core::Size > &pair_chunks, utility::vector1< std::pair< core::Size, core::Size > > &pair_chunks_pairs)	protocols::hybridization::HybridizeFoldtreeDynamic	private
HybridizeFoldtreeDynamic()	protocols::hybridization::HybridizeFoldtreeDynamic
initial_asymm_foldtree_	protocols::hybridization::HybridizeFoldtreeDynamic	private
initialize(core::pose::Pose &pose, protocols::loops::Loops const &core_chunks, utility::vector1< std::pair< core::Size, core::Size > > const &strand_pairs, std::set< core::Size > const &strand_pair_library_positions)	protocols::hybridization::HybridizeFoldtreeDynamic
jumps_and_cuts_from_foldtree(core::kinematics::FoldTree &foldtree, utility::vector1< std::pair< core::Size, core::Size > > &jumps, utility::vector1< core::Size > &cuts)	protocols::hybridization::HybridizeFoldtreeDynamic	private
make_complete_chunks(utility::vector1< core::Size > cut_positions, core::Size n_residues)	protocols::hybridization::HybridizeFoldtreeDynamic	private
num_nonvirt_residues_	protocols::hybridization::HybridizeFoldtreeDynamic	private
num_polymer_residues_	protocols::hybridization::HybridizeFoldtreeDynamic	private
remove_cut(core::Size const cut, utility::vector1< core::Size > &cuts)	protocols::hybridization::HybridizeFoldtreeDynamic	private
reset(core::pose::Pose &pose)	protocols::hybridization::HybridizeFoldtreeDynamic
rooted_chunk_indices_	protocols::hybridization::HybridizeFoldtreeDynamic	private
saved_ft_	protocols::hybridization::HybridizeFoldtreeDynamic	private
saved_n_residue_	protocols::hybridization::HybridizeFoldtreeDynamic	private
set_core_chunks(const protocols::loops::Loops &chunks)	protocols::hybridization::HybridizeFoldtreeDynamic	private
strand_pair_library_positions_	protocols::hybridization::HybridizeFoldtreeDynamic	private
strand_pairs_	protocols::hybridization::HybridizeFoldtreeDynamic	private
template_core_chunk_indices_	protocols::hybridization::HybridizeFoldtreeDynamic	private
update(core::pose::Pose &pose)	protocols::hybridization::HybridizeFoldtreeDynamic	private
virtual_res_	protocols::hybridization::HybridizeFoldtreeDynamic	private