| accept_claims(claims::DofClaims &claims) | protocols::topology_broker::TopologyBroker | private |
| add(TopologyClaimerOP cl) | protocols::topology_broker::TopologyBroker | |
| add_chainbreak_variants(core::pose::Pose &pose, core::Size max_dist=0, core::kinematics::ShortestPathInFoldTreeCOP sp=nullptr) const | protocols::topology_broker::TopologyBroker | |
| add_constraints(core::pose::Pose &) const | protocols::topology_broker::TopologyBroker | private |
| adjust_relax_movemap(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyBroker | |
| apply(core::pose::Pose &) | protocols::topology_broker::TopologyBroker | |
| apply_filter(core::pose::Pose const &, abinitio::StageID, core::Real progress) const | protocols::topology_broker::TopologyBroker | |
| begin() const | protocols::topology_broker::TopologyBroker | inline |
| broking(claims::DofClaims const &all_claims, claims::DofClaims &pre_accepted) | protocols::topology_broker::TopologyBroker | private |
| build_fold_tree(claims::DofClaims &claims, core::Size nres) | protocols::topology_broker::TopologyBroker | private |
| build_fold_tree_from_claimer(core::pose::Pose &pose, core::kinematics::FoldTree &fold_tree) | protocols::topology_broker::TopologyBroker | private |
| bUseJobPose_ | protocols::topology_broker::TopologyBroker | private |
| check_chainbreak_variants(core::pose::Pose &pose) const | protocols::topology_broker::TopologyBroker | |
| claimer(core::Size i) const | protocols::topology_broker::TopologyBroker | inline |
| claimers_ | protocols::topology_broker::TopologyBroker | private |
| const_iterator typedef | protocols::topology_broker::TopologyBroker | |
| current_claims_ | protocols::topology_broker::TopologyBroker | private |
| current_pose() const | protocols::topology_broker::TopologyBroker | inline |
| current_pose_ | protocols::topology_broker::TopologyBroker | private |
| does_final_fold_tree_exist() const | protocols::topology_broker::TopologyBroker | inline |
| end() const | protocols::topology_broker::TopologyBroker | inline |
| final_fold_tree() const | protocols::topology_broker::TopologyBroker | inline |
| final_fold_tree_ | protocols::topology_broker::TopologyBroker | mutableprivate |
| fold_tree_ | protocols::topology_broker::TopologyBroker | private |
| generate_final_claims(claims::DofClaims &all_claims) | protocols::topology_broker::TopologyBroker | private |
| generate_round1(claims::DofClaims &all_claims) | protocols::topology_broker::TopologyBroker | private |
| generate_sequence_claims(claims::DofClaims &all_claims) | protocols::topology_broker::TopologyBroker | private |
| generate_symmetry_claims(claims::SymmetryClaims &all_claims) | protocols::topology_broker::TopologyBroker | private |
| get_self_ptr() const | protocols::topology_broker::TopologyBroker | inline |
| get_self_ptr() | protocols::topology_broker::TopologyBroker | inline |
| get_self_weak_ptr() const | protocols::topology_broker::TopologyBroker | inline |
| get_self_weak_ptr() | protocols::topology_broker::TopologyBroker | inline |
| has_chainbreaks_to_close() const | protocols::topology_broker::TopologyBroker | |
| has_sequence_claimer() | protocols::topology_broker::TopologyBroker | |
| initialize_cuts(claims::DofClaims &claims, core::pose::Pose &new_pose) | protocols::topology_broker::TopologyBroker | private |
| initialize_dofs(claims::DofClaims &claims, core::pose::Pose &new_pose) | protocols::topology_broker::TopologyBroker | private |
| initialize_sequence(claims::DofClaims &claims, core::pose::Pose &new_pose) | protocols::topology_broker::TopologyBroker | private |
| loop_frags(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyBroker | |
| make_sequence_symmetric(claims::DofClaims pre_accepted, core::pose::Pose &pose) | protocols::topology_broker::TopologyBroker | private |
| mover(core::pose::Pose const &, abinitio::StageID, core::scoring::ScoreFunction const &scorefxn, core::Real progress) const | protocols::topology_broker::TopologyBroker | |
| nres_ | protocols::topology_broker::TopologyBroker | private |
| num_claimers() const | protocols::topology_broker::TopologyBroker | inline |
| operator=(TopologyBroker const &) | protocols::topology_broker::TopologyBroker | |
| relay_message(ClaimerMessage &msg) const | protocols::topology_broker::TopologyBroker | |
| repack_scorefxn_ | protocols::topology_broker::TopologyBroker | private |
| resolve_sequence_label(std::string const &label) const | protocols::topology_broker::TopologyBroker | |
| resolve_symmetry_claims(claims::SymmetryClaims &symm_claims) | protocols::topology_broker::TopologyBroker | private |
| sequence_claims_ | protocols::topology_broker::TopologyBroker | private |
| sequence_number_resolver() const | protocols::topology_broker::TopologyBroker | inline |
| sequence_number_resolver_ | protocols::topology_broker::TopologyBroker | private |
| StageID typedef | protocols::topology_broker::TopologyBroker | private |
| start_pose_cuts_ | protocols::topology_broker::TopologyBroker | private |
| switch_to_fullatom(core::pose::Pose &) | protocols::topology_broker::TopologyBroker | |
| to_be_closed_cuts_ | protocols::topology_broker::TopologyBroker | private |
| TopologyBroker() | protocols::topology_broker::TopologyBroker | |
| TopologyBroker(TopologyBroker const &) | protocols::topology_broker::TopologyBroker | |
| TopologyClaimers typedef | protocols::topology_broker::TopologyBroker | private |
| use_fold_tree_from_claimer_ | protocols::topology_broker::TopologyBroker | private |
| use_job_pose(bool setting) | protocols::topology_broker::TopologyBroker | inline |
| use_job_pose() const | protocols::topology_broker::TopologyBroker | inline |
| ~TopologyBroker() override | protocols::topology_broker::TopologyBroker | |
1.8.7