protocols::cluster::calibur::AdjacentList Class Reference

#include <AdjacentList.hh>

Public Member Functions
	AdjacentList ()
	AdjacentList (int which, int num)
	~AdjacentList ()
void	add (int n, core::Real d, bool ifNeigh)
void	remove (int n)
core::Real	getD (int n) const

Public Attributes
int	which_
int	num_neighbors_
std::vector< int >	neigh
std::vector< core::Real >	dist
std::vector< LIST_TYPE >	reverse_index_

Static Public Attributes
static ADJ_LIST_MODE	list_mode_

Constructor & Destructor Documentation

protocols::cluster::calibur::AdjacentList::AdjacentList

(

)

References num_neighbors_, and which_.

protocols::cluster::calibur::AdjacentList::AdjacentList	(	int	which,
		int	num
	)

References _OVER_RMSD_, dist, neigh, num_neighbors_, reverse_index_, and which_.

protocols::cluster::calibur::AdjacentList::~AdjacentList

(

)

Member Function Documentation

void protocols::cluster::calibur::AdjacentList::add	(	int	n,
		core::Real	d,
		bool	ifNeigh
	)

References dist, protocols::cluster::calibur::LIST, list_mode_, protocols::cluster::calibur::LITE, neigh, num_neighbors_, and reverse_index_.

core::Real protocols::cluster::calibur::AdjacentList::getD

(

int

n

)

const

References _OVER_RMSD_, dist, protocols::cluster::calibur::LIST, list_mode_, and protocols::cluster::calibur::LITE.

Referenced by protocols::cluster::calibur::Clustering::listAdjacentLists().

void protocols::cluster::calibur::AdjacentList::remove

(

int

n

)

References dist, protocols::cluster::calibur::LIST, list_mode_, protocols::cluster::calibur::LITE, neigh, num_neighbors_, reverse_index_, and which_.

Member Data Documentation

std::vector<core::Real> protocols::cluster::calibur::AdjacentList::dist

Referenced by add(), AdjacentList(), getD(), protocols::cluster::calibur::Clustering::listAdjacentLists(), and remove().

ADJ_LIST_MODE protocols::cluster::calibur::AdjacentList::list_mode_

static

Referenced by add(), protocols::cluster::calibur::Clustering::buildAdjacentLists(), protocols::cluster::calibur::Clustering::findLargestClusters(), getD(), protocols::cluster::calibur::Clustering::initialize(), protocols::cluster::calibur::Clustering::listAdjacentLists(), protocols::cluster::calibur::Clustering::reinitialize(), remove(), and protocols::cluster::calibur::Clustering::showClusters().

std::vector<int> protocols::cluster::calibur::AdjacentList::neigh

Referenced by add(), AdjacentList(), protocols::cluster::calibur::Clustering::listAdjacentLists(), remove(), protocols::cluster::calibur::Clustering::removeDecoys(), and protocols::cluster::calibur::Clustering::showClusters().

int protocols::cluster::calibur::AdjacentList::num_neighbors_

Referenced by add(), AdjacentList(), protocols::cluster::calibur::Clustering::cluster(), protocols::cluster::calibur::Clustering::listAdjacentLists(), remove(), protocols::cluster::calibur::Clustering::removeDecoys(), and protocols::cluster::calibur::Clustering::showClusters().

std::vector<LIST_TYPE> protocols::cluster::calibur::AdjacentList::reverse_index_

Referenced by add(), AdjacentList(), and remove().

int protocols::cluster::calibur::AdjacentList::which_

Referenced by AdjacentList(), protocols::cluster::calibur::Clustering::cluster(), protocols::cluster::calibur::Clustering::listAdjacentLists(), remove(), protocols::cluster::calibur::Clustering::removeDecoys(), and protocols::cluster::calibur::Clustering::showClusters().

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The documentation for this class was generated from the following files:

• src/protocols/cluster/calibur/AdjacentList.hh
• src/protocols/cluster/calibur/AdjacentList.cc
• src/protocols/cluster/calibur/Clustering.cc