protocols::splice::SpliceInAntibody Member List

This is the complete list of members for protocols::splice::SpliceInAntibody, including all inherited members.

abstract_parse_tag(TagCOP const tag)	protocols::splice::SpliceOut	virtual
adjust_n_ter_tail_length(core::pose::Pose &pose)	protocols::splice::SpliceInAntibody
adjust_template_jump(core::pose::Pose &pose)	protocols::splice::SpliceInAntibody
allowed_cuts_	protocols::splice::SpliceIn	protected
antibody_DB(std::string const &s)	protocols::splice::SpliceInAntibody	inline
antibody_DB()	protocols::splice::SpliceInAntibody	inline
antibody_DB_	protocols::splice::SpliceInAntibody	private
apply(Pose &pose) override	protocols::splice::SpliceInAntibody	virtual
assign_from_res_to_res(core::pose::Pose const &pose) override	protocols::splice::SpliceInAntibody	virtual
build_ideal_segment(core::pose::Pose &pose) override	protocols::splice::SpliceInAntibody	virtual
call_mover	protocols::splice::SpliceOut	protected
call_mover_tail_	protocols::splice::SpliceOut	protected
ccd_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)	protocols::splice::SpliceOut
check_pose_pssm_match(core::pose::PoseOP pose, utility::vector1< core::sequence::SequenceProfileOP > profile_vector)	protocols::splice::SpliceOut	protected
check_source_segment()	protocols::splice::SpliceOut
checkpointing_file_	protocols::splice::SpliceIn	protected
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::splice::SpliceInAntibody	virtual
copy_dofs_from_source()	protocols::splice::SpliceOut
create()	protocols::moves::Mover	virtual
current_dbase_entry_	protocols::splice::SpliceIn	protected
cut_secondarystruc(bool const r)	protocols::splice::SpliceOut	inline
cut_secondarystruc() const	protocols::splice::SpliceOut	inline
database_entry() const	protocols::splice::SpliceInAntibody	inline
database_entry(core::Size const d)	protocols::splice::SpliceInAntibody	inline
database_entry_	protocols::splice::SpliceIn	protected
database_pdb_entry(std::string const &s)	protocols::splice::SpliceInAntibody	inline
database_pdb_entry() const	protocols::splice::SpliceInAntibody	inline
database_pdb_entry_	protocols::splice::SpliceIn	protected
dbase_begin() const	protocols::splice::SpliceInAntibody	inline
dbase_const_iterator typedef	protocols::splice::SpliceOut
dbase_end() const	protocols::splice::SpliceInAntibody	inline
dbase_file_name() const	protocols::splice::SpliceOut
dbase_file_name(std::string const &f)	protocols::splice::SpliceOut
dbase_iterate() const	protocols::splice::SpliceInAntibody	inline
dbase_iterate(bool const d)	protocols::splice::SpliceInAntibody	inline
dbase_iterate_	protocols::splice::SpliceIn	protected
dbase_subset_	protocols::splice::SpliceIn	protected
delete_hairpin(bool const b)	protocols::splice::SpliceOut	inline
delete_hairpin() const	protocols::splice::SpliceOut	inline
delete_hairpin_c() const	protocols::splice::SpliceOut	inline
delete_hairpin_c(core::Size const c)	protocols::splice::SpliceOut	inline
delete_hairpin_n() const	protocols::splice::SpliceOut	inline
delete_hairpin_n(core::Size const c)	protocols::splice::SpliceOut	inline
delta_lengths_	protocols::splice::SpliceIn	protected
design_shell_	protocols::splice::SpliceOut	protected
end_dbase_subset_	protocols::splice::SpliceIn	protected
find_dbase_entry(core::pose::Pose const &pose) override	protocols::splice::SpliceInAntibody	virtual
find_disulfide_postions(core::pose::Pose const &pose, utility::vector1< core::Size > &cys_pos)	protocols::splice::SpliceInAntibody
find_non_active_site_cut_site(core::pose::Pose const &pose)	protocols::splice::SpliceOut	protected
find_vl_vh_cut(core::pose::Pose pose)	protocols::splice::SpliceInAntibody
first_pass_	protocols::splice::SpliceIn	protected
fold_tree_nodes_	protocols::splice::SpliceOut	protected
fresh_instance() const override	protocols::splice::SpliceInAntibody	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::splice::SpliceInAntibody	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
handle_mover_tag(TagCOP const tag, basic::datacache::DataMap &data)	protocols::splice::SpliceOut
ignore_chain_break_	protocols::splice::SpliceOut	protected
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
load_from_checkpoint()	protocols::splice::SpliceIn
load_pdb_segments_from_pose_comments(core::pose::Pose const &p)	protocols::splice::SpliceOut
min_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)	protocols::splice::SpliceOut
min_seg() const	protocols::splice::SpliceInAntibody	inline
min_seg(bool const d)	protocols::splice::SpliceInAntibody	inline
min_seg_	protocols::splice::SpliceIn	protected
minimize_segment(core::pose::Pose &pose)	protocols::splice::SpliceIn	virtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::splice::SpliceInAntibody	static
mover_type_	protocols::splice::SpliceOut	protected
name()	protocols::moves::Mover	inlinestatic
name_for_filter()	protocols::splice::SpliceOut	virtual
pack(core::pose::Pose &pose, core::pack::task::TaskFactoryOP tf)	protocols::splice::SpliceIn
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::splice::SpliceInAntibody	virtual
parse_SpliceOut_tags(TagCOP const tag, basic::datacache::DataMap &data)	protocols::splice::SpliceOut
pdb_to_H3_seq_map_	protocols::splice::SpliceOut	protected
place_cut_site_in_segment(core::pose::Pose const &pose)	protocols::splice::SpliceOut	virtual
Pose typedef	protocols::splice::SpliceOut
pose_cys_pos_	protocols::splice::SpliceInAntibody	private
PoseCOP typedef	protocols::moves::Mover
protein_family_to_database_	protocols::splice::SpliceOut	protected
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::splice::SpliceInAntibody	static
randomize_cut(bool const b)	protocols::splice::SpliceOut	inline
randomize_cut()	protocols::splice::SpliceOut	inline
rb_sensitive() const	protocols::splice::SpliceOut	inline
rb_sensitive(bool const r)	protocols::splice::SpliceOut	inline
read_torsion_database()	protocols::splice::SpliceIn	virtual
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
remove_hairpin(core::pose::Pose &pose) const	protocols::splice::SpliceOut
repack_shell_	protocols::splice::SpliceOut	protected
reset_status()	protocols::moves::Mover
retrieve_values()	protocols::splice::SpliceOut	protected
rms_cutoff() const	protocols::splice::SpliceOut	inline
rms_cutoff(core::Real const r)	protocols::splice::SpliceOut	inline
rms_cutoff_loop() const	protocols::splice::SpliceOut	inline
rms_cutoff_loop(core::Real const r)	protocols::splice::SpliceOut	inline
rtmin(core::pose::Pose &pose, core::pack::task::TaskFactoryOP tf)	protocols::splice::SpliceIn
save_values()	protocols::splice::SpliceOut	protected
scorefxn(core::scoring::ScoreFunctionOP sf)	protocols::splice::SpliceInAntibody	inline
scorefxn() const	protocols::splice::SpliceInAntibody	inline
scorefxn_	protocols::splice::SpliceOut	protected
set_anchor_res() override	protocols::splice::SpliceInAntibody	virtual
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_fold_tree_nodes(core::pose::Pose const &pose) override	protocols::splice::SpliceInAntibody	virtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop_length_change(protocols::protein_interface_design::movers::LoopLengthChange &llc) override	protocols::splice::SpliceInAntibody	virtual
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_source_from_to_res()	protocols::splice::SpliceOut	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
source_from_res(core::Size const c)	protocols::splice::SpliceOut	inline
source_from_res()	protocols::splice::SpliceOut	inline
source_pdb() const	protocols::splice::SpliceOut	inline
source_pdb(std::string const &s)	protocols::splice::SpliceOut	inline
source_pose_	protocols::splice::SpliceOut	protected
source_to_res(core::Size const c)	protocols::splice::SpliceOut	inline
source_to_res()	protocols::splice::SpliceOut	inline
splice_filter() const	protocols::splice::SpliceOut
splice_filter(protocols::filters::FilterOP f)	protocols::splice::SpliceOut
SpliceIn()	protocols::splice::SpliceIn
SpliceInAntibody()	protocols::splice::SpliceInAntibody
SpliceInTail()	protocols::splice::SpliceInTail
splicemanager	protocols::splice::SpliceOut	protected
SpliceOut()	protocols::splice::SpliceOut
SpliceOutFilter(core::pose::Pose *pose)	protocols::splice::SpliceOut
SpliceOutRMSDFilter(core::pose::Pose *pose)	protocols::splice::SpliceOut
Strings typedef	protocols::moves::Mover
submover_	protocols::splice::SpliceOut	protected
superimpose_source_on_pose(core::pose::Pose const &pose, core::pose::Pose &source_pose)	protocols::splice::SpliceOut	virtual
superimposed(bool const b)	protocols::splice::SpliceOut	inline
superimposed()	protocols::splice::SpliceOut	inline
TagCOP typedef	protocols::moves::Mover
tail_diff_	protocols::splice::SpliceInAntibody	private
tail_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)	protocols::splice::SpliceOut
tail_torsion_database_	protocols::splice::SpliceIn	protected
template_cys_pos_	protocols::splice::SpliceInAntibody	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
thread_original_sequence() const	protocols::splice::SpliceOut	inline
thread_original_sequence(bool const s)	protocols::splice::SpliceOut	inline
tolerance_	protocols::splice::SpliceOut	protected
torsion_database_	protocols::splice::SpliceIn	protected
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
update_vl_vh_cut()	protocols::splice::SpliceInAntibody
vl_vh_cut_	protocols::splice::SpliceInAntibody	private
write_database_to_file(core::pose::Pose const &pose)	protocols::splice::SpliceOut	virtual
write_to_database_	protocols::splice::SpliceOut	protected
~SpliceIn() override	protocols::splice::SpliceIn
~SpliceInAntibody() override	protocols::splice::SpliceInAntibody
~SpliceInTail() override	protocols::splice::SpliceInTail
~SpliceOut() override	protocols::splice::SpliceOut