| assign_fragprobs(std::map< core::Size, core::Real > const &perrsd_score, core::Real threshold) | protocols::hybridization::FragmentBiasAssigner | private |
| assign_prob_with_rsd_wdw(int rsn) | protocols::hybridization::FragmentBiasAssigner | private |
| automode(core::pose::Pose &pose, core::Real score_cut) | protocols::hybridization::FragmentBiasAssigner | |
| automode_scores(core::pose::Pose &pose, std::map< core::Size, core::Real > &scores) | protocols::hybridization::FragmentBiasAssigner | |
| bfactors(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| cal_perrsd_score(core::pose::Pose &pose, core::scoring::ScoreType const &score_type, utility::vector1< core::Real > &perrsd_score, core::Real weight) | protocols::hybridization::FragmentBiasAssigner | private |
| chainbreak(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| compute_frag_bias(utility::vector1< numeric::random::WeightedSampler > &frag_bias, core::pose::Pose &pose, utility::vector1< core::fragment::FragSetOP > fragments) | protocols::hybridization::FragmentBiasAssigner | |
| cumulate_probability() | protocols::hybridization::FragmentBiasAssigner | inline |
| cumulative_ | protocols::hybridization::FragmentBiasAssigner | private |
| density(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| density_nbr(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| exclude_residues(std::set< core::Size > residues_to_exclude) | protocols::hybridization::FragmentBiasAssigner | |
| fragbias_reporter(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| FragmentBiasAssigner(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| fragmentProbs_ | protocols::hybridization::FragmentBiasAssigner | private |
| fragProbs_assigned_ | protocols::hybridization::FragmentBiasAssigner | private |
| geometry(core::pose::Pose &pose, core::Real weight=1.0) | protocols::hybridization::FragmentBiasAssigner | |
| include_residues(std::set< core::Size > residues_to_include) | protocols::hybridization::FragmentBiasAssigner | |
| init(core::pose::Pose &pose) | protocols::hybridization::FragmentBiasAssigner | |
| n_symm_subunit_ | protocols::hybridization::FragmentBiasAssigner | private |
| nres_ | protocols::hybridization::FragmentBiasAssigner | private |
| perrsd_dens_ | protocols::hybridization::FragmentBiasAssigner | private |
| perrsd_geometry_ | protocols::hybridization::FragmentBiasAssigner | private |
| perrsd_nbrdens_ | protocols::hybridization::FragmentBiasAssigner | private |
| perrsd_rama_ | protocols::hybridization::FragmentBiasAssigner | private |
| rama(core::pose::Pose &pose, core::Real weight=0.2) | protocols::hybridization::FragmentBiasAssigner | |
| rsd_wdw_size_ | protocols::hybridization::FragmentBiasAssigner | private |
| score_threshold_ | protocols::hybridization::FragmentBiasAssigner | private |
| set_rsd_wdw_to_assign_prob(int wdw=0) | protocols::hybridization::FragmentBiasAssigner | inline |
| set_score_threshold(core::Real threshold) | protocols::hybridization::FragmentBiasAssigner | inline |
| set_wdw_to_freeze(int wdw=0) | protocols::hybridization::FragmentBiasAssigner | inline |
| symminfo_ | protocols::hybridization::FragmentBiasAssigner | private |
| uniform() | protocols::hybridization::FragmentBiasAssigner | |
| user(std::set< core::Size > user_pos, protocols::loops::LoopsOP loops) | protocols::hybridization::FragmentBiasAssigner | |
| wdw_to_freeze_ | protocols::hybridization::FragmentBiasAssigner | private |
1.8.7