| abego_ | protocols::forge::components::VarLengthBuild | private |
| add_rcg(RemodelConstraintGeneratorOP rcg) | protocols::forge::components::VarLengthBuild | |
| add_setup_mover(moves::MoverOP mover_in) | protocols::forge::components::VarLengthBuild | |
| add_user_provided_mover(moves::MoverOP mover_in) | protocols::forge::components::VarLengthBuild | |
| apply(Pose &pose) override | protocols::forge::components::VarLengthBuild | virtual |
| BIOPConstIterator typedef | protocols::forge::components::VarLengthBuild | |
| BuildManager typedef | protocols::forge::components::VarLengthBuild | |
| cache_fragments() const | protocols::forge::components::VarLengthBuild | inline |
| cache_fragments(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| cache_fragments_ | protocols::forge::components::VarLengthBuild | private |
| centroid_build(Pose &pose) | protocols::forge::components::VarLengthBuild | protectedvirtual |
| clear_fragments() | protocols::forge::components::VarLengthBuild | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_rcgs() | protocols::forge::components::VarLengthBuild | |
| clear_setup_movers() | protocols::forge::components::VarLengthBuild | |
| clear_user_provided_movers() | protocols::forge::components::VarLengthBuild | |
| clone() const override | protocols::forge::components::VarLengthBuild | virtual |
| ConstantLengthFragSetOP typedef | protocols::forge::components::VarLengthBuild | |
| create() | protocols::moves::Mover | virtual |
| frag1_ | protocols::forge::components::VarLengthBuild | private |
| frag3_ | protocols::forge::components::VarLengthBuild | private |
| frag9_ | protocols::forge::components::VarLengthBuild | private |
| fragfull_ | protocols::forge::components::VarLengthBuild | private |
| fragments_picked_ | protocols::forge::components::VarLengthBuild | private |
| FrameList typedef | protocols::forge::components::VarLengthBuild | |
| fresh_instance() const override | protocols::forge::components::VarLengthBuild | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::forge::components::VarLengthBuild | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| ignore_cmdline_enzdes_cstfile(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| ignore_cmdline_enzdes_cstfile_ | protocols::forge::components::VarLengthBuild | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| Interval typedef | protocols::forge::components::VarLengthBuild | |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_mover_fold_tree_constant(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| loop_mover_fold_tree_constant_ | protocols::forge::components::VarLengthBuild | private |
| loop_mover_instance(loops::LoopsOP const loops, MoveMap const &false_mm) | protocols::forge::components::VarLengthBuild | protectedvirtual |
| loop_mover_str() const | protocols::forge::components::VarLengthBuild | inline |
| loop_mover_str(String const &str) | protocols::forge::components::VarLengthBuild | inline |
| loop_mover_str_ | protocols::forge::components::VarLengthBuild | private |
| Loops typedef | protocols::forge::components::VarLengthBuild | |
| manager() const | protocols::forge::components::VarLengthBuild | inline |
| manager(BuildManager const &manager) | protocols::forge::components::VarLengthBuild | |
| manager_ | protocols::forge::components::VarLengthBuild | private |
| max_linear_chainbreak() const | protocols::forge::components::VarLengthBuild | inline |
| max_linear_chainbreak(Real const tol) | protocols::forge::components::VarLengthBuild | inline |
| max_linear_chainbreak_ | protocols::forge::components::VarLengthBuild | private |
| MoveMap typedef | protocols::forge::components::VarLengthBuild | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| MoverOP typedef | protocols::forge::components::VarLengthBuild | |
| name() | protocols::moves::Mover | inlinestatic |
| new_secondary_structure_override() const | protocols::forge::components::VarLengthBuild | inline |
| new_secondary_structure_override(String const &str) | protocols::forge::components::VarLengthBuild | inline |
| new_secondary_structure_override_ | protocols::forge::components::VarLengthBuild | private |
| new_sequence_override() const | protocols::forge::components::VarLengthBuild | inline |
| new_sequence_override(String const &str) | protocols::forge::components::VarLengthBuild | inline |
| new_sequence_override_ | protocols::forge::components::VarLengthBuild | private |
| num_fragpick() const | protocols::forge::components::VarLengthBuild | inline |
| num_fragpick(core::Size const num) | protocols::forge::components::VarLengthBuild | inline |
| num_fragpick_ | protocols::forge::components::VarLengthBuild | private |
| operator=(VarLengthBuild const &rval) | protocols::forge::components::VarLengthBuild | private |
| OrderedFragSetOP typedef | protocols::forge::components::VarLengthBuild | |
| Original2Modified typedef | protocols::forge::components::VarLengthBuild | |
| original_sequence() | protocols::forge::components::VarLengthBuild | inline |
| original_sequence(String const &seq) | protocols::forge::components::VarLengthBuild | inline |
| original_sequence_ | protocols::forge::components::VarLengthBuild | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| pick_all_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, core::Size const n_frags) | protocols::forge::components::VarLengthBuild | protected |
| pick_fragments(String const &complete_ss, String const &complete_aa, utility::vector1< String > const &complete_abego, Interval const &interval, core::Size const frag_length, core::Size const n_frags) | protocols::forge::components::VarLengthBuild | protected |
| Pose typedef | protocols::forge::components::VarLengthBuild | |
| PoseCOP typedef | protocols::moves::Mover | |
| Positions typedef | protocols::forge::components::VarLengthBuild | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| rcgs_ | protocols::forge::components::VarLengthBuild | private |
| Real typedef | protocols::forge::components::VarLengthBuild | |
| recover_original_on_failure() const | protocols::forge::components::VarLengthBuild | inline |
| recover_original_on_failure(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| recover_original_on_failure_ | protocols::forge::components::VarLengthBuild | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remodel_data_ | protocols::forge::components::VarLengthBuild | private |
| RemodelConstraintGeneratorOP typedef | protocols::forge::components::VarLengthBuild | |
| RemodelData typedef | protocols::forge::components::VarLengthBuild | |
| remove_remodel_constraints(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
| repeat_tail_length_ | protocols::forge::components::VarLengthBuild | private |
| reset_status() | protocols::moves::Mover | |
| restart_mode() const | protocols::forge::components::VarLengthBuild | inline |
| restart_mode(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| restart_mode_ | protocols::forge::components::VarLengthBuild | private |
| scorefunction(ScoreFunction const &sfx) | protocols::forge::components::VarLengthBuild | |
| scorefunction(ScoreFunctionOP const &sfx) | protocols::forge::components::VarLengthBuild | |
| ScoreFunction typedef | protocols::forge::components::VarLengthBuild | |
| ScoreFunctionOP typedef | protocols::forge::components::VarLengthBuild | |
| set_abego(utility::vector1< String > const &abego) | protocols::forge::components::VarLengthBuild | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_starting_non_canonical(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_movers_ | protocols::forge::components::VarLengthBuild | private |
| setup_remodel_constraints(Pose &pose) | protocols::forge::components::VarLengthBuild | protected |
| sfx_ | protocols::forge::components::VarLengthBuild | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Size typedef | protocols::forge::components::VarLengthBuild | |
| String typedef | protocols::forge::components::VarLengthBuild | |
| Strings typedef | protocols::moves::Mover | |
| Super typedef | protocols::forge::components::VarLengthBuild | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| use_fullmer() const | protocols::forge::components::VarLengthBuild | inline |
| use_fullmer(bool const flag) | protocols::forge::components::VarLengthBuild | inline |
| use_fullmer_ | protocols::forge::components::VarLengthBuild | private |
| user_provided_movers_ | protocols::forge::components::VarLengthBuild | private |
| user_provided_movers_apply_cycle_ | protocols::forge::components::VarLengthBuild | private |
| vall_memory_usage() const | protocols::forge::components::VarLengthBuild | inline |
| vall_memory_usage(VLB_VallMemoryUsage::Enum const level) | protocols::forge::components::VarLengthBuild | inline |
| vall_memory_usage_ | protocols::forge::components::VarLengthBuild | private |
| VarLengthBuild() | protocols::forge::components::VarLengthBuild | |
| VarLengthBuild(BuildManager const &manager) | protocols::forge::components::VarLengthBuild | |
| VarLengthBuild(BuildManager const &manager, RemodelData const &remodel_data) | protocols::forge::components::VarLengthBuild | |
| VarLengthBuild(VarLengthBuild const &rval) | protocols::forge::components::VarLengthBuild | |
| ~VarLengthBuild() override | protocols::forge::components::VarLengthBuild | |
1.8.7