| add_filter(protocols::filters::FilterOP, std::string const sample_type, core::Real filter_delta) | protocols::matdes::MatDesGreedyOptMutationMover | |
| apply(Pose &pose) override | protocols::matdes::MatDesGreedyOptMutationMover | virtual |
| calc_pfront_poses_filter_ranks() | protocols::matdes::MatDesGreedyOptMutationMover | |
| clear_cached_data() | protocols::matdes::MatDesGreedyOptMutationMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::matdes::MatDesGreedyOptMutationMover | virtual |
| combined_filters_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| compound_filters_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| create() | protocols::moves::Mover | virtual |
| delta_filters() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| delta_filters(utility::vector1< protocols::simple_filters::DeltaFilterOP > const d) | protocols::matdes::MatDesGreedyOptMutationMover | |
| design_shell_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| diversify() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| diversify(bool const b) | protocols::matdes::MatDesGreedyOptMutationMover | |
| diversify_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| dump_pdb() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| dump_pdb(bool const dump_pdb) | protocols::matdes::MatDesGreedyOptMutationMover | |
| dump_pdb_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| dump_scoring_table(std::string filename, core::pose::Pose const &ref_pose) const | protocols::matdes::MatDesGreedyOptMutationMover | |
| dump_table() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| dump_table(bool const dump_table) | protocols::matdes::MatDesGreedyOptMutationMover | |
| dump_table_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| filter_deltas() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_deltas(utility::vector1< core::Real > const filter_deltas) | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_deltas_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| filter_pareto_opt_poses() | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_seqpos_pareto_opt_ptmuts() | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_thresholds() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_thresholds(utility::vector1< std::pair< std::string, core::Real > > filter_thresholds) | protocols::matdes::MatDesGreedyOptMutationMover | |
| filter_thresholds_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| filters() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| filters(utility::vector1< protocols::filters::FilterOP > filters) | protocols::matdes::MatDesGreedyOptMutationMover | |
| filters_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| force_natro() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| force_natro(bool const f) | protocols::matdes::MatDesGreedyOptMutationMover | |
| force_natro_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| force_natro_for_stored_task_names() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| force_natro_for_stored_task_names(utility::vector1< std::string > force_natro_for_stored_task_names) | protocols::matdes::MatDesGreedyOptMutationMover | |
| force_natro_for_stored_task_names_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| fresh_instance() const override | protocols::matdes::MatDesGreedyOptMutationMover | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::matdes::MatDesGreedyOptMutationMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| incl_nonopt() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| incl_nonopt(bool const b) | protocols::matdes::MatDesGreedyOptMutationMover | |
| incl_nonopt_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| keep_trying() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| keep_trying(bool const k) | protocols::matdes::MatDesGreedyOptMutationMover | |
| keep_trying_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| MatDesGreedyOptMutationMover() | protocols::matdes::MatDesGreedyOptMutationMover | |
| MatDesGreedyOptMutationMover(core::pack::task::TaskFactoryOP task_factory, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MoverOP relax_mover, utility::vector1< protocols::filters::FilterOP > filters, utility::vector1< std::pair< std::string, core::Real > > filter_thresholds, utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters, utility::vector1< std::string > sample_types, utility::vector1< core::Real > filter_deltas, bool dump_pdb=false, bool dump_table=false, bool parallel=false, bool stop_before_condition=false, bool skip_best_check=false, bool rtmin=false, bool shuffle_order=false, bool diversify=false, bool incl_nonopt=false, bool force_natro=false, bool keep_trying=false, protocols::filters::FilterOP stopping_condition=protocols::filters::FilterOP(nullptr)) | protocols::matdes::MatDesGreedyOptMutationMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::matdes::MatDesGreedyOptMutationMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| nstruct_iter_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| parallel() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| parallel(bool const parallel) | protocols::matdes::MatDesGreedyOptMutationMover | |
| parallel_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override | protocols::matdes::MatDesGreedyOptMutationMover | virtual |
| pfront_poses_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| pfront_poses_filter_ranks_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| pfront_poses_filter_vals_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| Pose typedef | protocols::matdes::MatDesGreedyOptMutationMover | |
| pose_coords_are_same(core::pose::Pose const &pose1, core::pose::Pose const &pose2) | protocols::matdes::MatDesGreedyOptMutationMover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::matdes::MatDesGreedyOptMutationMover | static |
| ref_pose_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| reference_pose() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| reference_pose(core::pose::PoseOP const reference_pose) | protocols::matdes::MatDesGreedyOptMutationMover | |
| reference_pose_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| relax_mover() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| relax_mover(protocols::moves::MoverOP relax_mover) | protocols::matdes::MatDesGreedyOptMutationMover | |
| relax_mover_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| repack_shell_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| reset_delta_filter_baselines(Pose &pose) | protocols::matdes::MatDesGreedyOptMutationMover | |
| reset_delta_filters_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| reset_status() | protocols::moves::Mover | |
| rtmin() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| rtmin(bool const b) | protocols::matdes::MatDesGreedyOptMutationMover | |
| rtmin_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| sample_types() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| sample_types(utility::vector1< std::string > const sample_types) | protocols::matdes::MatDesGreedyOptMutationMover | |
| sample_types_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| scorefxn() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::matdes::MatDesGreedyOptMutationMover | |
| scorefxn_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| seqpos_aa_vals_vec_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_task_for_filters() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| set_task_for_filters(utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters) | protocols::matdes::MatDesGreedyOptMutationMover | |
| set_task_for_filters_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| shuffle_order() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| shuffle_order(bool const b) | protocols::matdes::MatDesGreedyOptMutationMover | |
| shuffle_order_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| skip_best_check() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| skip_best_check(bool const skip_best_check) | protocols::matdes::MatDesGreedyOptMutationMover | |
| skip_best_check_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| stop_before_condition() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| stop_before_condition(bool const stop_before_condition) | protocols::matdes::MatDesGreedyOptMutationMover | |
| stop_before_condition_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| stopping_condition(protocols::filters::FilterOP f) | protocols::matdes::MatDesGreedyOptMutationMover | inline |
| stopping_condition() const | protocols::matdes::MatDesGreedyOptMutationMover | inline |
| stopping_condition_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory() const | protocols::matdes::MatDesGreedyOptMutationMover | |
| task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::matdes::MatDesGreedyOptMutationMover | |
| task_factory_ | protocols::matdes::MatDesGreedyOptMutationMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~MatDesGreedyOptMutationMover() override | protocols::matdes::MatDesGreedyOptMutationMover | |
1.8.7