protocols::simple_filters::BuriedUnsatHbondFilter Member List

This is the complete list of members for protocols::simple_filters::BuriedUnsatHbondFilter, including all inherited members.

apply(core::pose::Pose const &pose) const override	protocols::simple_filters::BuriedUnsatHbondFilter	virtual
atomic_depth_apo_surface_	protocols::simple_filters::BuriedUnsatHbondFilter	private
atomic_depth_deeper_than_	protocols::simple_filters::BuriedUnsatHbondFilter	private
atomic_depth_poly_leu_	protocols::simple_filters::BuriedUnsatHbondFilter	private
atomic_depth_probe_radius_	protocols::simple_filters::BuriedUnsatHbondFilter	private
atomic_depth_resolution_	protocols::simple_filters::BuriedUnsatHbondFilter	private
atomic_depth_selection_	protocols::simple_filters::BuriedUnsatHbondFilter	private
burial_cutoff_	protocols::simple_filters::BuriedUnsatHbondFilter	private
burial_cutoff_apo_	protocols::simple_filters::BuriedUnsatHbondFilter	private
BuriedUnsatHbondFilter()	protocols::simple_filters::BuriedUnsatHbondFilter
BuriedUnsatHbondFilter(core::Size const upper_threshold, core::select::residue_selector::ResidueSelectorOP residue_selector=nullptr, bool const use_legacy_options=false, bool const generous_hbonds=true, bool const use_vasa=true, bool const ignore_surface_res=false, bool const ignore_bb_heavy_unsats=false, bool const use_sc_neighbors=false, bool const only_interface=false, bool const use_ddG_style=false, bool const use_hbnet_behavior=false)	protocols::simple_filters::BuriedUnsatHbondFilter
BuriedUnsatHbondFilter(BuriedUnsatHbondFilter const &rval)	protocols::simple_filters::BuriedUnsatHbondFilter
class_name()	protocols::simple_filters::BuriedUnsatHbondFilter	static
clear()	protocols::filters::Filter	inlinevirtual
clone() const override	protocols::simple_filters::BuriedUnsatHbondFilter	inlinevirtual
compute(core::pose::Pose const &pose) const	protocols::simple_filters::BuriedUnsatHbondFilter
Filter()	protocols::filters::Filter
Filter(std::string const &)	protocols::filters::Filter
Filter(Filter const &)	protocols::filters::Filter
fresh_instance() const override	protocols::simple_filters::BuriedUnsatHbondFilter	inlinevirtual
generous_hbonds_	protocols::simple_filters::BuriedUnsatHbondFilter	private
get_deep_apo_atoms(core::pose::Pose const &pose) const	protocols::simple_filters::BuriedUnsatHbondFilter	private
get_type() const	protocols::filters::Filter	inlinevirtual
get_user_defined_name() const	protocols::filters::Filter	inline
ignore_bb_heavy_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
ignore_surface_res_	protocols::simple_filters::BuriedUnsatHbondFilter	private
jump_num_	protocols::simple_filters::BuriedUnsatHbondFilter	private
legacy_counting_	protocols::simple_filters::BuriedUnsatHbondFilter	private
legacy_options_	protocols::simple_filters::BuriedUnsatHbondFilter	private
max_hbond_energy_	protocols::simple_filters::BuriedUnsatHbondFilter	private
name() const override	protocols::simple_filters::BuriedUnsatHbondFilter	virtual
name_of_sasa_calc_	protocols::simple_filters::BuriedUnsatHbondFilter	private
only_interface_	protocols::simple_filters::BuriedUnsatHbondFilter	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::simple_filters::BuriedUnsatHbondFilter	virtual
print_out_info_to_pdb_	protocols::simple_filters::BuriedUnsatHbondFilter	private
probe_radius_	protocols::simple_filters::BuriedUnsatHbondFilter	private
probe_radius_apo_	protocols::simple_filters::BuriedUnsatHbondFilter	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::filters::Filter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::simple_filters::BuriedUnsatHbondFilter	static
report(std::ostream &out, core::pose::Pose const &pose) const override	protocols::simple_filters::BuriedUnsatHbondFilter	virtual
report_all_heavy_atom_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
report_all_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
report_bb_heavy_atom_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
report_nonheavy_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
report_sc_heavy_atom_unsats_	protocols::simple_filters::BuriedUnsatHbondFilter	private
report_sm(core::pose::Pose const &pose) const override	protocols::simple_filters::BuriedUnsatHbondFilter	virtual
residue_selector_	protocols::simple_filters::BuriedUnsatHbondFilter	private
residue_surface_cutoff_	protocols::simple_filters::BuriedUnsatHbondFilter	private
score(core::pose::Pose &pose)	protocols::filters::Filter	virtual
scorename_	protocols::filters::Filter	protected
set_atomic_depth_apo_surface(core::Real atomic_depth_apo_surface)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_atomic_depth_deeper_than(bool atomic_depth_deeper_than)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_atomic_depth_poly_leu(bool atomic_depth_poly_leu)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_atomic_depth_probe_radius(core::Real atomic_depth_probe_radius)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_atomic_depth_resolution(core::Real atomic_depth_resolution)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_atomic_depth_selection(core::Real atomic_depth_selection)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_burial_cutoff(core::Real burial_cutoff)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_burial_cutoff_apo(core::Real burial_cutoff_apo)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_dalphaball_sasa()	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_generous_hbonds_(bool generous_hbonds)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_ignore_bb_heavy_unsats(bool ignore_bb_heavy_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_ignore_surface_res(bool ignore_surface_res)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_jump_num(core::Size jump_num)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_legacy_options()	protocols::simple_filters::BuriedUnsatHbondFilter	inlineprivate
set_max_hbond_energy(core::Real max_hbond_energy)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_print_out_info_to_pdb(bool print_out_info_to_pdb)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_probe_radius(core::Real probe_radius)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_probe_radius_apo(core::Real probe_radius_apo)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_report_all_heavy_atom_unsats(bool report_all_heavy_atom_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_report_all_unsats(bool report_all_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_report_bb_heavy_atom_unsats(bool report_bb_heavy_atom_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_report_nonheavy_unsats(bool report_nonheavy_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_report_sc_heavy_atom_unsats(bool report_sc_heavy_atom_unsats)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_residue_selector(core::select::residue_selector::ResidueSelectorOP residue_selector)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_residue_surface_cutoff(core::Real residue_surface_cutoff)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_upper_threshold(core::Size upper_threshold)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_use_ddG_style(bool use_ddG_style)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_use_hbnet_behavior(bool use_hbnet_behavior)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_use_reporter_behavior(bool use_reporter_behavior)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_use_sc_neighbors(bool use_sc_neighbors)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_use_vsasa(bool use_vsasa)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
set_user_defined_name(std::string const &name)	protocols::filters::Filter	inline
sfxn_	protocols::simple_filters::BuriedUnsatHbondFilter	private
sym_dof_names(std::string const &sym_dofs)	protocols::simple_filters::BuriedUnsatHbondFilter	inline
sym_dof_names() const	protocols::simple_filters::BuriedUnsatHbondFilter	inline
sym_dof_names_	protocols::simple_filters::BuriedUnsatHbondFilter	private
task_factory(core::pack::task::TaskFactoryOP tf)	protocols::simple_filters::BuriedUnsatHbondFilter
task_factory() const	protocols::simple_filters::BuriedUnsatHbondFilter
task_factory_	protocols::simple_filters::BuriedUnsatHbondFilter	private
update_cutoffs()	protocols::simple_filters::BuriedUnsatHbondFilter	inlineprivate
upper_threshold_	protocols::simple_filters::BuriedUnsatHbondFilter	private
use_ddG_style_	protocols::simple_filters::BuriedUnsatHbondFilter	private
use_hbnet_behavior_	protocols::simple_filters::BuriedUnsatHbondFilter	private
use_reporter_behavior_	protocols::simple_filters::BuriedUnsatHbondFilter	private
use_sc_neighbors_	protocols::simple_filters::BuriedUnsatHbondFilter	private
use_vsasa_	protocols::simple_filters::BuriedUnsatHbondFilter	private
~BuriedUnsatHbondFilter() override	protocols::simple_filters::BuriedUnsatHbondFilter
~Filter() override	protocols::filters::Filter