protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions Class Reference

#include <StepWiseMoveSelectorOptions.hh>

Inheritance diagram for protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions:

Public Member Functions
	StepWiseMoveSelectorOptions ()
virtual void	parse_my_tag (utility::tag::TagCOP)
	Initialize from the recursive "tag" structure. More...
virtual std::string	type () const
	The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery. More...
StepWiseMoveSelectorOptionsOP	clone () const
	clone the options More...
void	initialize_from_command_line ()
void	initialize_from_options_collection (utility::options::OptionCollection const &options)
void	set_allow_internal_hinge_moves (bool const &setting)
bool	allow_internal_hinge_moves () const
void	set_allow_internal_local_moves (bool const &setting)
bool	allow_internal_local_moves () const
void	set_add_delete_frequency (core::Real const &setting)
core::Real	add_delete_frequency () const
void	set_from_scratch_frequency (core::Real const &setting)
core::Real	from_scratch_frequency () const
void	set_docking_frequency (core::Real const &setting)
core::Real	docking_frequency () const
void	set_submotif_frequency (core::Real const &setting)
core::Real	submotif_frequency () const
void	set_switch_focus_frequency (core::Real const &setting)
core::Real	switch_focus_frequency () const
bool const &	skip_deletions () const
void	set_skip_deletions (bool const &setting)
void	set_skip_bulge_frequency (core::Real const &setting)
core::Real	skip_bulge_frequency () const
void	set_vary_loop_length_frequency (core::Real const &setting)
core::Real	vary_loop_length_frequency () const
void	set_allow_submotif_split (bool const &setting)
bool	allow_submotif_split () const
void	set_force_submotif_without_intervening_bulge (bool const &setting)
bool	force_submotif_without_intervening_bulge () const
void	set_filter_complex_cycles (bool const &setting)
bool	filter_complex_cycles () const

Static Public Member Functions
static void	list_options_read (utility::options::OptionKeyList &opts)

Private Attributes
bool	allow_internal_hinge_moves_
bool	allow_internal_local_moves_
core::Real	add_delete_frequency_
core::Real	from_scratch_frequency_
core::Real	docking_frequency_
core::Real	submotif_frequency_
core::Real	switch_focus_frequency_
core::Real	skip_bulge_frequency_
core::Real	vary_loop_length_frequency_
bool	filter_complex_cycles_
bool	allow_submotif_split_
bool	force_submotif_without_intervening_bulge_
bool	skip_deletions_

Constructor & Destructor Documentation

protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::StepWiseMoveSelectorOptions

(

)

Member Function Documentation

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::add_delete_frequency ( ) const

inline

References add_delete_frequency_.

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_internal_hinge_moves ( ) const

inline

References allow_internal_hinge_moves_.

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_internal_local_moves ( ) const

inline

References allow_internal_local_moves_.

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_submotif_split ( ) const

inline

References allow_submotif_split_.

StepWiseMoveSelectorOptionsOP protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::clone

(

)

const

clone the options

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::docking_frequency ( ) const

inline

References docking_frequency_.

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::filter_complex_cycles ( ) const

inline

References filter_complex_cycles_.

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::force_submotif_without_intervening_bulge ( ) const

inline

References force_submotif_without_intervening_bulge_.

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::from_scratch_frequency ( ) const

inline

References from_scratch_frequency_.

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::initialize_from_command_line

(

)

References initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::initialize_from_options_collection

(

utility::options::OptionCollection const &

options

)

References allow_submotif_split_, filter_complex_cycles_, force_submotif_without_intervening_bulge_, set_add_delete_frequency(), set_allow_internal_hinge_moves(), set_allow_internal_local_moves(), set_docking_frequency(), set_from_scratch_frequency(), set_skip_bulge_frequency(), set_skip_deletions(), set_submotif_frequency(), set_switch_focus_frequency(), set_vary_loop_length_frequency(), and protocols::TR().

Referenced by initialize_from_command_line().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::list_options_read ( utility::options::OptionKeyList &  opts )

static

virtual void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::parse_my_tag ( utility::tag::TagCOP  )

inlinevirtual

Initialize from the recursive "tag" structure.

Reimplemented in protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions.

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_add_delete_frequency ( core::Real const &  setting )

inline

References add_delete_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_allow_internal_hinge_moves ( bool const &  setting )

inline

References allow_internal_hinge_moves_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_allow_internal_local_moves ( bool const &  setting )

inline

References allow_internal_local_moves_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_allow_submotif_split ( bool const &  setting )

inline

References allow_submotif_split_.

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_docking_frequency ( core::Real const &  setting )

inline

References docking_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_filter_complex_cycles ( bool const &  setting )

inline

References filter_complex_cycles_.

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_force_submotif_without_intervening_bulge ( bool const &  setting )

inline

References force_submotif_without_intervening_bulge_.

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_from_scratch_frequency ( core::Real const &  setting )

inline

References from_scratch_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_skip_bulge_frequency ( core::Real const &  setting )

inline

References skip_bulge_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_skip_deletions ( bool const &  setting )

inline

References skip_deletions_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_submotif_frequency ( core::Real const &  setting )

inline

References submotif_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_switch_focus_frequency ( core::Real const &  setting )

inline

References switch_focus_frequency_.

Referenced by initialize_from_options_collection().

void protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::set_vary_loop_length_frequency ( core::Real const &  setting )

inline

References vary_loop_length_frequency_.

Referenced by initialize_from_options_collection().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::skip_bulge_frequency ( ) const

inline

References skip_bulge_frequency_.

bool const& protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::skip_deletions ( ) const

inline

References skip_deletions_.

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::submotif_frequency ( ) const

inline

References submotif_frequency_.

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::switch_focus_frequency ( ) const

inline

References switch_focus_frequency_.

virtual std::string protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::type ( ) const

inlinevirtual

The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery.

Reimplemented in protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions.

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::vary_loop_length_frequency ( ) const

inline

References vary_loop_length_frequency_.

Member Data Documentation

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::add_delete_frequency_

private

Referenced by add_delete_frequency(), and set_add_delete_frequency().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_internal_hinge_moves_

private

Referenced by allow_internal_hinge_moves(), and set_allow_internal_hinge_moves().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_internal_local_moves_

private

Referenced by allow_internal_local_moves(), and set_allow_internal_local_moves().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::allow_submotif_split_

private

Referenced by allow_submotif_split(), initialize_from_options_collection(), and set_allow_submotif_split().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::docking_frequency_

private

Referenced by docking_frequency(), and set_docking_frequency().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::filter_complex_cycles_

private

Referenced by filter_complex_cycles(), initialize_from_options_collection(), and set_filter_complex_cycles().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::force_submotif_without_intervening_bulge_

private

Referenced by force_submotif_without_intervening_bulge(), initialize_from_options_collection(), and set_force_submotif_without_intervening_bulge().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::from_scratch_frequency_

private

Referenced by from_scratch_frequency(), and set_from_scratch_frequency().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::skip_bulge_frequency_

private

Referenced by set_skip_bulge_frequency(), and skip_bulge_frequency().

bool protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::skip_deletions_

private

Referenced by set_skip_deletions(), and skip_deletions().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::submotif_frequency_

private

Referenced by set_submotif_frequency(), and submotif_frequency().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::switch_focus_frequency_

private

Referenced by set_switch_focus_frequency(), and switch_focus_frequency().

core::Real protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions::vary_loop_length_frequency_

private

Referenced by set_vary_loop_length_frequency(), and vary_loop_length_frequency().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/monte_carlo/mover/options/StepWiseMoveSelectorOptions.hh
• src/protocols/stepwise/monte_carlo/mover/options/StepWiseMoveSelectorOptions.cc