core::scoring::motif::XformScore Class Reference

#include <motif_hash_stuff.hh>

Inheritance diagram for core::scoring::motif::XformScore:

Public Types
typedef uint32_t	Key
typedef float	Score
typedef numeric::geometry::hashing::SixDCoordinateBinner	SixDCoordinateBinner
typedef numeric::geometry::hashing::bin_index_hasher	bin_index_hasher
typedef boost::unordered_map < Key, Score, bin_index_hasher >	ScoreMap

Public Member Functions
	XformScore (Real cart_resl, Real ang_resl)
void	set_score (Key const &, Score const &count)
void	add_score (Key const &, Score const &count)
void	max_score (Key const &, Score const &count)
Score	score_of_bin (Real6 const &xform) const
Score	score_of_bin (Xform const &xform) const
Score	score_of_bin (Key const &key) const
Real	score_of_bin_normalized (Real6 const &xform) const
bool	write_binary (std::ostream &out) const
bool	write_binary (std::string const &fname) const
Size	num_bins () const
Size	num_possible_bins () const
Score	tot_score () const
void	print_scores (std::ostream &out, std::string const tag="XH ") const
void	print_scores_norm (std::ostream &out, std::string const tag="XH ") const
void	clear ()
Real	cart_size () const
Key	bin_index (Real6 const &rt) const
void	print_quantiles (std::ostream &out, int num) const
void	prune_small_bins (Score thresh)
void	sanity_check () const
void	aggregate_add (XformScore const &other)
void	aggregate_max (XformScore const &other)

Static Public Member Functions
static bool	read_binary (XformScoreOP &xs, std::istream &in, bool clearme=true, Real const &wt=1.0)
static bool	read_binary (XformScoreOP &xs, std::string const &fname, bool clearme=true, Real const &wt=1.0)
static bool	read_binary (XformScoreOP &xs, utility::vector1< std::string > const &fnames, Real const &wt=1.0)

Public Attributes
SixDCoordinateBinner	hasher_
ScoreMap	scores_
core::Real	cart_size_
core::Real	cart_resl_
core::Real	angle_resl_

Private Member Functions
	XformScore ()

Friends
std::ostream &	operator<< (std::ostream &out, XformScore const &x)

Member Typedef Documentation

typedef numeric::geometry::hashing::bin_index_hasher core::scoring::motif::XformScore::bin_index_hasher

typedef uint32_t core::scoring::motif::XformScore::Key

typedef float core::scoring::motif::XformScore::Score

typedef boost::unordered_map< Key, Score, bin_index_hasher > core::scoring::motif::XformScore::ScoreMap

typedef numeric:: geometry::hashing::SixDCoordinateBinner core::scoring::motif::XformScore::SixDCoordinateBinner

Constructor & Destructor Documentation

core::scoring::motif::XformScore::XformScore	(	Real	cart_resl,
		Real	ang_resl
	)

References sanity_check().

core::scoring::motif::XformScore::XformScore ( )

private

References sanity_check().

Member Function Documentation

void core::scoring::motif::XformScore::add_score	(	Key const &	key,
		Score const &	count
	)

References scores_.

Referenced by aggregate_add().

void core::scoring::motif::XformScore::aggregate_add

(

XformScore const &

other

)

References add_score(), and scores_.

void core::scoring::motif::XformScore::aggregate_max

(

XformScore const &

other

)

References max_score(), and scores_.

XformScore::Key core::scoring::motif::XformScore::bin_index

(

Real6 const &

rt

)

const

References hasher_.

Referenced by score_of_bin(), and score_of_bin_normalized().

Real core::scoring::motif::XformScore::cart_size ( ) const

inline

References cart_size_.

Referenced by read_binary(), and write_binary().

void core::scoring::motif::XformScore::clear

(

)

References scores_.

void core::scoring::motif::XformScore::max_score	(	Key const &	key,
		Score const &	count
	)

References protocols::mean_field::max(), and scores_.

Referenced by aggregate_max().

Size core::scoring::motif::XformScore::num_bins

(

)

const

References scores_.

Referenced by core::scoring::motif::operator<<(), and write_binary().

Size core::scoring::motif::XformScore::num_possible_bins

(

)

const

References hasher_.

Referenced by core::scoring::motif::operator<<().

void core::scoring::motif::XformScore::print_quantiles	(	std::ostream &	out,
		int	num
	)		const

References core::chemical::element::F, protocols::mean_field::max(), protocols::mean_field::min(), scores_, and core::chemical::element::W.

Referenced by core::scoring::motif::operator<<().

void core::scoring::motif::XformScore::print_scores	(	std::ostream &	out,
		std::string const	tag = "XH "
	)		const

References hasher_, and scores_.

void core::scoring::motif::XformScore::print_scores_norm	(	std::ostream &	out,
		std::string const	tag = "XH "
	)		const

References core::conformation::membrane::center, hasher_, and scores_.

void core::scoring::motif::XformScore::prune_small_bins

(

XformScore::Score

thresh

)

References scores_.

bool core::scoring::motif::XformScore::read_binary ( XformScoreOP &  xs, std::istream &  in, bool  clearme = true, Real const &  wt = 1.0  )

static

References cart_size(), core::scoring::motif::MOTIF_VERSION, and protocols::hybridization::score.

Referenced by core::scoring::motif::fill_xform_score_from_file(), and read_binary().

bool core::scoring::motif::XformScore::read_binary ( XformScoreOP &  xs, std::string const &  fname, bool  clearme = true, Real const &  wt = 1.0  )

static

References core::conformation::membrane::in, and read_binary().

bool core::scoring::motif::XformScore::read_binary ( XformScoreOP &  xs, utility::vector1< std::string > const &  fnames, Real const &  wt = 1.0  )

static

References read_binary().

void core::scoring::motif::XformScore::sanity_check

(

)

const

References angle_resl_, cart_resl_, cart_size_, and core::scoring::motif::MOTIF_HASH_CART_SIZE.

Referenced by XformScore().

XformScore::Score core::scoring::motif::XformScore::score_of_bin

(

Real6 const &

xform

)

const

References bin_index(), and scores_.

Referenced by score_of_bin(), and score_of_bin_normalized().

XformScore::Score core::scoring::motif::XformScore::score_of_bin

(

Xform const &

xform

)

const

References score_of_bin().

XformScore::Score core::scoring::motif::XformScore::score_of_bin

(

Key const &

key

)

const

References scores_.

Real core::scoring::motif::XformScore::score_of_bin_normalized

(

Real6 const &

xform

)

const

References bin_index(), core::conformation::membrane::center, hasher_, and score_of_bin().

void core::scoring::motif::XformScore::set_score	(	Key const &	key,
		Score const &	count
	)

References scores_.

XformScore::Score core::scoring::motif::XformScore::tot_score

(

)

const

References scores_.

Referenced by core::scoring::motif::operator<<(), and write_binary().

bool core::scoring::motif::XformScore::write_binary

(

std::ostream &

out

)

const

References angle_resl_, cart_resl_, cart_size(), cart_size_, core::scoring::motif::MOTIF_VERSION, num_bins(), scores_, and tot_score().

Referenced by write_binary().

bool core::scoring::motif::XformScore::write_binary

(

std::string const &

fname

)

const

References core::conformation::membrane::out, and write_binary().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, XformScore const &  x  )

friend

Member Data Documentation

core::Real core::scoring::motif::XformScore::angle_resl_

Referenced by core::scoring::motif::operator<<(), sanity_check(), and write_binary().

core::Real core::scoring::motif::XformScore::cart_resl_

Referenced by core::scoring::motif::operator<<(), sanity_check(), and write_binary().

core::Real core::scoring::motif::XformScore::cart_size_

Referenced by cart_size(), core::scoring::motif::operator<<(), sanity_check(), and write_binary().

SixDCoordinateBinner core::scoring::motif::XformScore::hasher_

Referenced by bin_index(), num_possible_bins(), print_scores(), print_scores_norm(), and score_of_bin_normalized().

ScoreMap core::scoring::motif::XformScore::scores_

Referenced by add_score(), aggregate_add(), aggregate_max(), clear(), max_score(), num_bins(), print_quantiles(), print_scores(), print_scores_norm(), prune_small_bins(), score_of_bin(), set_score(), tot_score(), and write_binary().

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The documentation for this class was generated from the following files:

• src/core/scoring/motif/motif_hash_stuff.hh
• src/core/scoring/motif/motif_hash_stuff.cc