protocols::hotspot_hashing::SearchPatternRotSetOp Class Reference

#include <SearchPatternRotSetOp.hh>

Inheritance diagram for protocols::hotspot_hashing::SearchPatternRotSetOp:

Public Types
typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO	parent

Public Member Functions
	SearchPatternRotSetOp (SearchPatternOP pattern)
core::pack::rotamer_set::RotamerSetOperationOP	clone () const override
utility::vector1 < core::conformation::ResidueCOP >	get_rigid_body_confs (core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::Size residue_index) override
	returns candidate alternate RB conformations More...
core::Real	increase_packer_residue_radius (core::pose::Pose const &pose, core::pack::task::PackerTaskCOP, core::Size residue_index) override
Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
void	alter_rotamer_set (core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::pack::task::PackerTask const &ptask, utility::graph::GraphCOP packer_neighbor_graph, core::pack::rotamer_set::RotamerSet &rotamer_set) override
	Adds additional rotamers at each rb conf. More...
Public Member Functions inherited from core::pack::rotamer_set::RotamerSetOperation
	RotamerSetOperation ()
	~RotamerSetOperation () override
virtual Real	increase_packer_residue_radius (pose::Pose const &pose, task::PackerTaskCOP the_task, core::Size residue_in) const

Private Attributes
utility::vector1 < core::kinematics::Stub >	search_stubs_

Additional Inherited Members
Static Public Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
static core::Real	determine_largest_nbr_atom_distance (core::conformation::Residue const &target_res, utility::vector1< core::conformation::ResidueCOP > alternate_confs)
	returns the largest observed distance between the nbr atom in the target res and the nbr atom in any of the candidate rb confs More...
Protected Member Functions inherited from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO
	RigidBodyMoveBaseRSO ()
	RigidBodyMoveBaseRSO (const RigidBodyMoveBaseRSO &other)

Member Typedef Documentation

typedef protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO protocols::hotspot_hashing::SearchPatternRotSetOp::parent

Constructor & Destructor Documentation

protocols::hotspot_hashing::SearchPatternRotSetOp::SearchPatternRotSetOp

(

SearchPatternOP

pattern

)

Member Function Documentation

core::pack::rotamer_set::RotamerSetOperationOP protocols::hotspot_hashing::SearchPatternRotSetOp::clone ( ) const

overridevirtual

Implements core::pack::rotamer_set::RotamerSetOperation.

utility::vector1< core::conformation::ResidueCOP > protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs ( core::pose::Pose const &  pose, core::pack::task::PackerTask const &  ptask, core::Size  residue_index  )

overridevirtual

returns candidate alternate RB conformations

Implements protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

References protocols::hotspot_hashing::StubGenerator::moveFromStubFrame(), protocols::hotspot_hashing::StubGenerator::moveIntoStubFrame(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, protocols::hotspot_hashing::stub_to_points(), and protocols::hotspot_hashing::TR().

core::Real protocols::hotspot_hashing::SearchPatternRotSetOp::increase_packer_residue_radius ( core::pose::Pose const &  pose, core::pack::task::PackerTaskCOP  , core::Size  residue_index  )

overridevirtual

Reimplemented from protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO.

References core::kinematics::Stub::global2local(), core::pose::Pose::residue(), protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame(), search_stubs_, and protocols::hotspot_hashing::TR().

Member Data Documentation

utility::vector1<core::kinematics::Stub> protocols::hotspot_hashing::SearchPatternRotSetOp::search_stubs_

private

Referenced by get_rigid_body_confs(), and increase_packer_residue_radius().

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The documentation for this class was generated from the following files:

• src/protocols/hotspot_hashing/SearchPatternRotSetOp.hh
• src/protocols/hotspot_hashing/SearchPatternRotSetOp.cc