Architect that creates a StructureData using multiple architects. More...

#include <CompoundArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::CompoundArchitect:

Public Types
typedef protocols::denovo_design::architects::DeNovoArchitect	DeNovoArchitect

typedef protocols::denovo_design::architects::DeNovoArchitectOP	DeNovoArchitectOP

typedef protocols::denovo_design::components::StructureData	StructureData

typedef protocols::denovo_design::components::StructureDataOP	StructureDataOP

Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP	StructureDataOP

Public Member Functions
	CompoundArchitect (std::string const &id_value)

	~CompoundArchitect () override

std::string	type () const override
	simply returns the name of this type of architect More...

DeNovoArchitectOP	clone () const override

StructureDataOP	design (core::pose::Pose const &pose, core::Real &random) const override

void	add_architect (DeNovoArchitect const &architect)

void	add_connection (connection::ConnectionArchitect const &connection)

Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
	DeNovoArchitect (std::string const &id)

	~DeNovoArchitect () override

components::StructureDataOP	apply (core::pose::Pose const &pose) const

Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
	StructureArchitect (std::string const &id)

	~StructureArchitect () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)

std::string const &	id () const

void	set_id (std::string const &new_id)

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static std::string	subelement_ct_namer (std::string)

static std::string	pairing_subelement_ct_namer (std::string)

static std::string	pairing_group_namer ()

static void	define_pairing_group (utility::tag::XMLSchemaDefinition &)

Static Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
static void	add_common_denovo_architect_attributes (utility::tag::AttributeList &attlist)

Static Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
static void	attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)

Protected Member Functions
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	Configuration by XML. More...

Static Protected Member Functions
static void	attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)

Private Member Functions
void	parse_architect_tags (utility::tag::TagCOP tag, basic::datacache::DataMap &data)

void	parse_architect_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)

void	parse_connection_tags (utility::tag::TagCOP tag, basic::datacache::DataMap &data)

void	parse_connection_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)

void	parse_pairing_tags (utility::tag::Tag const &tag)

void	parse_pairing_tag (utility::tag::Tag const &tag)

void	add_parent_name (StructureArchitect &architect) const

Private Attributes
DeNovoArchitectCOPs	architects_

connection::ConnectionArchitectCOPs	connections_

components::SegmentPairingCOPs	pairings_

Additional Inherited Members
Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const	DATA_MAP_NAME = "DeNovoArchitects"

Detailed Description

Architect that creates a StructureData using multiple architects.

Member Typedef Documentation

typedef protocols::denovo_design::architects::DeNovoArchitect protocols::denovo_design::architects::CompoundArchitect::DeNovoArchitect

typedef protocols::denovo_design::architects::DeNovoArchitectOP protocols::denovo_design::architects::CompoundArchitect::DeNovoArchitectOP

typedef protocols::denovo_design::components::StructureData protocols::denovo_design::architects::CompoundArchitect::StructureData

typedef protocols::denovo_design::components::StructureDataOP protocols::denovo_design::architects::CompoundArchitect::StructureDataOP

Constructor & Destructor Documentation

protocols::denovo_design::architects::CompoundArchitect::CompoundArchitect ( std::string const & id_value )

protocols::denovo_design::architects::CompoundArchitect::~CompoundArchitect ( )

overridedefault

Member Function Documentation

void protocols::denovo_design::architects::CompoundArchitect::add_architect ( DeNovoArchitect const & architect )

References architects_, and protocols::denovo_design::architects::DeNovoArchitect::clone().

Referenced by protocols::denovo_design::movers::ExtendChainMover::apply(), and protocols::denovo_design::movers::BridgeChainsMover::apply().

void protocols::denovo_design::architects::CompoundArchitect::add_connection ( connection::ConnectionArchitect const & connection )

References protocols::denovo_design::connection::ConnectionArchitect::clone(), and connections_.

Referenced by protocols::denovo_design::movers::ExtendChainMover::apply(), and protocols::denovo_design::movers::BridgeChainsMover::apply().

void protocols::denovo_design::architects::CompoundArchitect::add_parent_name ( StructureArchitect & architect ) const

private

static void protocols::denovo_design::architects::CompoundArchitect::attributes_for_parse_my_tag ( utility::tag::AttributeList & attlist )

staticprotected

static std::string protocols::denovo_design::architects::CompoundArchitect::class_name ( )

inlinestatic

Referenced by design(), protocols::denovo_design::architects::CompoundArchitectCreator::keyname(), provide_xml_schema(), and type().

CompoundArchitect::DeNovoArchitectOP protocols::denovo_design::architects::CompoundArchitect::clone ( ) const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

void protocols::denovo_design::architects::CompoundArchitect::define_pairing_group ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::denovo_design::components::HelixPairing::class_name(), protocols::denovo_design::components::StrandPairing::class_name(), protocols::denovo_design::components::HelixSheetPairing::class_name(), protocols::denovo_design::components::SegmentPairing::complex_type_name_for_pairing(), pairing_group_namer(), protocols::denovo_design::components::HelixPairing::provide_xml_schema(), protocols::denovo_design::components::StrandPairing::provide_xml_schema(), and protocols::denovo_design::components::HelixSheetPairing::provide_xml_schema().

Referenced by provide_xml_schema().

CompoundArchitect::StructureDataOP protocols::denovo_design::architects::CompoundArchitect::design	(	core::pose::Pose const &	pose,
		core::Real &	random
	)		const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

References architects_, class_name(), connections_, and pairings_.

std::string protocols::denovo_design::architects::CompoundArchitect::pairing_group_namer ( )

static

Referenced by define_pairing_group(), and provide_xml_schema().

std::string protocols::denovo_design::architects::CompoundArchitect::pairing_subelement_ct_namer ( std::string tag_name )

static

void protocols::denovo_design::architects::CompoundArchitect::parse_architect_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

private

References architects_.

Referenced by parse_architect_tags().

void protocols::denovo_design::architects::CompoundArchitect::parse_architect_tags	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

private

References parse_architect_tag(), and protocols::hybridization::t.

Referenced by parse_tag().

void protocols::denovo_design::architects::CompoundArchitect::parse_connection_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

private

References connections_, and protocols::denovo_design::connection::store_connection_architect().

Referenced by parse_connection_tags().

void protocols::denovo_design::architects::CompoundArchitect::parse_connection_tags	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

private

References parse_connection_tag(), and protocols::hybridization::t.

Referenced by parse_tag().

void protocols::denovo_design::architects::CompoundArchitect::parse_pairing_tag ( utility::tag::Tag const & tag )

private

References protocols::denovo_design::components::SegmentPairing::create(), core::scoring::pair, and pairings_.

Referenced by parse_pairing_tags().

void protocols::denovo_design::architects::CompoundArchitect::parse_pairing_tags ( utility::tag::Tag const & tag )

private

References parse_pairing_tag(), and protocols::hybridization::t.

Referenced by parse_tag().

void protocols::denovo_design::architects::CompoundArchitect::parse_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overrideprotectedvirtual

Configuration by XML.

Implements protocols::denovo_design::architects::DeNovoArchitect.

References parse_architect_tags(), parse_connection_tags(), parse_pairing_tags(), protocols::hybridization::t, and type().

void protocols::denovo_design::architects::CompoundArchitect::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::denovo_design::architects::DeNovoArchitect::add_common_denovo_architect_attributes(), protocols::denovo_design::architects::DeNovoArchitectFactory::architect_group_name(), protocols::denovo_design::connection::ConnectionArchitect::attributes_for_parse_my_tag(), class_name(), protocols::denovo_design::architects::DeNovoArchitectFactory::complex_type_name_for_architect(), define_pairing_group(), pairing_group_namer(), and subelement_ct_namer().

Referenced by protocols::denovo_design::architects::CompoundArchitectCreator::provide_xml_schema().

std::string protocols::denovo_design::architects::CompoundArchitect::subelement_ct_namer ( std::string tag_name )

static

Referenced by provide_xml_schema().

std::string protocols::denovo_design::architects::CompoundArchitect::type ( ) const

overridevirtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References class_name().

Referenced by parse_tag().

Member Data Documentation

DeNovoArchitectCOPs protocols::denovo_design::architects::CompoundArchitect::architects_

private

Referenced by add_architect(), design(), and parse_architect_tag().

connection::ConnectionArchitectCOPs protocols::denovo_design::architects::CompoundArchitect::connections_

private

Referenced by add_connection(), design(), and parse_connection_tag().

components::SegmentPairingCOPs protocols::denovo_design::architects::CompoundArchitect::pairings_

private

Referenced by design(), and parse_pairing_tag().

The documentation for this class was generated from the following files:

src/protocols/denovo_design/architects/CompoundArchitect.hh
src/protocols/denovo_design/architects/CompoundArchitect.cc

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation