| add_objective_function_info(core::io::silent::SilentStructOP ss, protocols::wum::SilentStructStore &sstore) const | protocols::mpi_refinement::MultiObjective | |
| add_objective_function_info(protocols::wum::SilentStructStore &sstore) const | protocols::mpi_refinement::MultiObjective | |
| calculate_pool_diversity(protocols::wum::SilentStructStore &structs) const | protocols::mpi_refinement::MultiObjective | |
| calculate_pool_diversity(protocols::wum::SilentStructStore &structs1, protocols::wum::SilentStructStore &structs2) const | protocols::mpi_refinement::MultiObjective | |
| calculate_structure_diversity(core::io::silent::SilentStructOP ss1, protocols::wum::SilentStructStore &structs) const | protocols::mpi_refinement::MultiObjective | private |
| filter_similar(protocols::wum::SilentStructStore &structs, std::string const measure, core::Real const criteria, std::string const score_for_priority, core::Size const nmax=0) | protocols::mpi_refinement::MultiObjective | |
| fobjnames(core::Size i) const | protocols::mpi_refinement::MultiObjective | inline |
| fobjnames_ | protocols::mpi_refinement::MultiObjective | private |
| formatted_objs_names() const | protocols::mpi_refinement::MultiObjective | |
| formatted_objs_values(core::io::silent::SilentStruct const &ss) const | protocols::mpi_refinement::MultiObjective | |
| get_fobj(core::io::silent::SilentStruct const &ss, core::Size i) const | protocols::mpi_refinement::MultiObjective | inline |
| get_fobj(core::io::silent::SilentStruct const &ss, std::string name) const | protocols::mpi_refinement::MultiObjective | inline |
| get_fobj(core::io::silent::SilentStructCOP pss, core::Size i) const | protocols::mpi_refinement::MultiObjective | inline |
| get_scorefxn(core::Size const i) const | protocols::mpi_refinement::MultiObjective | inline |
| has_score(std::string value) const | protocols::mpi_refinement::MultiObjective | inline |
| iha_cut() const | protocols::mpi_refinement::MultiObjective | inline |
| iha_cut_ | protocols::mpi_refinement::MultiObjective | private |
| iha_penalty_mode() const | protocols::mpi_refinement::MultiObjective | inline |
| iha_penalty_mode_ | protocols::mpi_refinement::MultiObjective | private |
| iha_penalty_slope() const | protocols::mpi_refinement::MultiObjective | inline |
| iha_penalty_slope_ | protocols::mpi_refinement::MultiObjective | private |
| init_pose() const | protocols::mpi_refinement::MultiObjective | inline |
| init_pose_ | protocols::mpi_refinement::MultiObjective | private |
| is_dominant(core::io::silent::SilentStructCOP ss1, core::io::silent::SilentStructCOP ss2) | protocols::mpi_refinement::MultiObjective | private |
| MultiObjective() | protocols::mpi_refinement::MultiObjective | |
| nobjs() const | protocols::mpi_refinement::MultiObjective | inline |
| nremain_reset() const | protocols::mpi_refinement::MultiObjective | inline |
| nremain_reset_ | protocols::mpi_refinement::MultiObjective | private |
| obj_cut_increment_ | protocols::mpi_refinement::MultiObjective | private |
| obj_dominant_cut_ | protocols::mpi_refinement::MultiObjective | private |
| objsfxnOPs_ | protocols::mpi_refinement::MultiObjective | private |
| set_defaults() | protocols::mpi_refinement::MultiObjective | private |
| set_iha_cut(core::Real value) | protocols::mpi_refinement::MultiObjective | inline |
| set_iha_penalty_mode(std::string value) | protocols::mpi_refinement::MultiObjective | inline |
| set_iha_penalty_slope(core::Real value) | protocols::mpi_refinement::MultiObjective | inline |
| set_init_pose(core::pose::Pose inpose) | protocols::mpi_refinement::MultiObjective | inline |
| set_nremain_reset(core::Size value) | protocols::mpi_refinement::MultiObjective | inline |
| succeed_substitute_info(core::io::silent::SilentStructOP ss_sub, core::io::silent::SilentStructCOP ss_ref, bool const reset) const | protocols::mpi_refinement::MultiObjective | |
| update_library_NSGAII(protocols::wum::SilentStructStore &structs, protocols::wum::SilentStructStore &new_structs, core::Size const nmax, bool const update_obj_cut=false) | protocols::mpi_refinement::MultiObjective | |
| update_library_seeds(protocols::wum::SilentStructStore &structs, protocols::wum::SilentStructStore &new_structs, core::Real const dcut, utility::vector1< core::Size > const seeds, std::string const prefix_in, std::string const objname="", core::Size const maxreplace=100000) | protocols::mpi_refinement::MultiObjective | |
| ~MultiObjective() override | protocols::mpi_refinement::MultiObjective | |
1.8.7