core::scoring::constraints::BackboneStubConstraint Member List

This is the complete list of members for core::scoring::constraints::BackboneStubConstraint, including all inherited members.

ang_cst_	core::scoring::constraints::BackboneStubConstraint	private
atom(Size const index) const override	core::scoring::constraints::BackboneStubConstraint	inlinevirtual
atom_ids_	core::scoring::constraints::BackboneStubConstraint	private
AtomID typedef	core::scoring::constraints::Constraint
backbone1_2_target_	core::scoring::constraints::BackboneStubConstraint	private
backbone1_target_	core::scoring::constraints::BackboneStubConstraint	private
backbone2_target_	core::scoring::constraints::BackboneStubConstraint	private
backbone_atom1_id_	core::scoring::constraints::BackboneStubConstraint	private
backbone_atom2_id_	core::scoring::constraints::BackboneStubConstraint	private
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, pose::Pose const &target_pose, Size const target_seqpos, core::Real const &superposition_bonus, core::Real const &force_constant)	core::scoring::constraints::BackboneStubConstraint
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, conformation::Residue const &target_rsd, core::Real const &superposition_bonus, core::Real const &force_constant, std::string const &sidechain_atom_name, std::string const &primary_backbone_atom_name, std::string const &backbone_atom1_name, std::string const &backbone_atom2_name)	core::scoring::constraints::BackboneStubConstraint
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, conformation::Residue const &target_rsd, core::Real const &superposition_bonus, core::Real const &force_constant)	core::scoring::constraints::BackboneStubConstraint
BackboneStubConstraint(BackboneStubConstraint const &src)	core::scoring::constraints::BackboneStubConstraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	virtual
clone() const override	core::scoring::constraints::BackboneStubConstraint	virtual
core::scoring::constraints::Constraint::clone(func::FuncOP) const	core::scoring::constraints::Constraint	virtual
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint
dist(core::scoring::func::XYZ_Func const &) const override	core::scoring::constraints::BackboneStubConstraint	inlinevirtual
core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	virtual
fill_f1_f2(AtomID const &atom, func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const override	core::scoring::constraints::BackboneStubConstraint	virtual
fixed_atom_id_	core::scoring::constraints::BackboneStubConstraint	private
fixed_reference_point_	core::scoring::constraints::BackboneStubConstraint	private
force_constant_	core::scoring::constraints::BackboneStubConstraint	private
get_func() const	core::scoring::constraints::Constraint	virtual
natoms() const override	core::scoring::constraints::BackboneStubConstraint	inlinevirtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint
operator==(Constraint const &other) const override	core::scoring::constraints::BackboneStubConstraint	virtual
primary_atom_id_	core::scoring::constraints::BackboneStubConstraint	private
primary_backbone_target_	core::scoring::constraints::BackboneStubConstraint	private
primary_sidechain_target_	core::scoring::constraints::BackboneStubConstraint	private
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	virtual
read_data(std::istream &)	core::scoring::constraints::Constraint	virtual
read_def(std::istream &, pose::Pose const &, core::scoring::func::FuncFactory const &)	core::scoring::constraints::Constraint	virtual
remap_resid(core::id::SequenceMapping const &) const	core::scoring::constraints::Constraint	virtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=nullptr) const override	core::scoring::constraints::BackboneStubConstraint	virtual
residues() const	core::scoring::constraints::Constraint	virtual
same_type_as_me(Constraint const &other) const override	core::scoring::constraints::BackboneStubConstraint	virtual
score(func::XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const override	core::scoring::constraints::BackboneStubConstraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose) const	core::scoring::constraints::Constraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const	core::scoring::constraints::Constraint	virtual
score_type() const	core::scoring::constraints::Constraint	inline
seqpos() const	core::scoring::constraints::BackboneStubConstraint
seqpos_	core::scoring::constraints::BackboneStubConstraint	private
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
show(std::ostream &out) const override	core::scoring::constraints::BackboneStubConstraint	virtual
show_def(std::ostream &, pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const	core::scoring::constraints::Constraint	virtual
sidechain_atom_id_	core::scoring::constraints::BackboneStubConstraint	private
sidechain_target_	core::scoring::constraints::BackboneStubConstraint	private
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	virtual
superposition_bonus_	core::scoring::constraints::BackboneStubConstraint	private
to_string() const	core::scoring::constraints::Constraint
type() const override	core::scoring::constraints::BackboneStubConstraint	inlinevirtual
~BackboneStubConstraint() override	core::scoring::constraints::BackboneStubConstraint	inline
~Constraint() override	core::scoring::constraints::Constraint