protocols::denovo_design::connection Namespace Reference

Classes
class	AreConnectablePredicate
class	ConnectionArchitect
	Architect for covalently joining two segments of a pose. More...
class	EXCN_ConnectionSetupFailed

Typedefs
typedef utility::pointer::shared_ptr < ConnectionArchitect >	ConnectionArchitectOP
typedef utility::pointer::shared_ptr < ConnectionArchitect const >	ConnectionArchitectCOP
typedef utility::vector1 < ConnectionArchitectCOP >	ConnectionArchitectCOPs
typedef components::Segment	Motif
typedef components::SegmentOP	MotifOP
typedef components::SegmentCOP	MotifCOP
typedef utility::vector1< MotifOP >	MotifOPs
typedef utility::vector1 < MotifCOP >	MotifCOPs
typedef utility::pointer::shared_ptr < AreConnectablePredicate >	AreConnectablePredicateOP
typedef utility::pointer::shared_ptr < AreConnectablePredicate const >	AreConnectablePredicateCOP

Functions
SegmentNames	parse_segment_names (std::string const &segment_name_str)
core::Real	calc_approx_loop_length (std::string const &abego)
ConnectionArchitectCOP	retrieve_connection_architect (std::string const &architect_name, basic::datacache::DataMap &data)
void	store_connection_architect (ConnectionArchitectOP architect, basic::datacache::DataMap &data)

Typedef Documentation

typedef utility::pointer::shared_ptr< AreConnectablePredicate const > protocols::denovo_design::connection::AreConnectablePredicateCOP

typedef utility::pointer::shared_ptr< AreConnectablePredicate > protocols::denovo_design::connection::AreConnectablePredicateOP

typedef utility::pointer::shared_ptr< ConnectionArchitect const > protocols::denovo_design::connection::ConnectionArchitectCOP

typedef utility::vector1< ConnectionArchitectCOP > protocols::denovo_design::connection::ConnectionArchitectCOPs

typedef utility::pointer::shared_ptr< ConnectionArchitect > protocols::denovo_design::connection::ConnectionArchitectOP

typedef components::Segment protocols::denovo_design::connection::Motif

typedef components::SegmentCOP protocols::denovo_design::connection::MotifCOP

typedef utility::vector1< MotifCOP > protocols::denovo_design::connection::MotifCOPs

typedef components::SegmentOP protocols::denovo_design::connection::MotifOP

typedef utility::vector1< MotifOP > protocols::denovo_design::connection::MotifOPs

Function Documentation

core::Real protocols::denovo_design::connection::calc_approx_loop_length

(

std::string const &

abego

)

References core::pose::motif::a().

Referenced by protocols::denovo_design::connection::AreConnectablePredicate::check_distance().

SegmentNames protocols::denovo_design::connection::parse_segment_names

(

std::string const &

segment_name_str

)

Referenced by protocols::denovo_design::connection::ConnectionArchitect::set_segment1_ids(), and protocols::denovo_design::connection::ConnectionArchitect::set_segment2_ids().

ConnectionArchitectCOP protocols::denovo_design::connection::retrieve_connection_architect	(	std::string const &	architect_name,
		basic::datacache::DataMap &	data
	)

References protocols::denovo_design::connection::ConnectionArchitect::DATA_MAP_NAME.

void protocols::denovo_design::connection::store_connection_architect	(	ConnectionArchitectOP	architect,
		basic::datacache::DataMap &	data
	)

References protocols::denovo_design::connection::ConnectionArchitect::DATA_MAP_NAME.

Referenced by protocols::denovo_design::architects::CompoundArchitect::parse_connection_tag().