protocols::rotamer_recovery::RRProtocolRelax Class Reference

#include <RRProtocolRelax.hh>

Inheritance diagram for protocols::rotamer_recovery::RRProtocolRelax:

Public Member Functions
	RRProtocolRelax ()
	~RRProtocolRelax () override
	RRProtocolRelax (RRProtocolRelax const &)
std::string	get_name () const override
std::string	get_parameters () const override
void	set_nonideal (bool setting)
bool	get_nonideal () const
void	set_cartesian (bool setting)
bool	get_cartesian () const
void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task) override
Public Member Functions inherited from protocols::rotamer_recovery::RRProtocol
	~RRProtocol () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
virtual void	parse_attributes_from_tag (basic::datacache::DataMap const &dm, utility::tag::TagCOP tag)
	As the RRProtocol is being read in. More...

Private Attributes
bool	nonideal_
bool	cartesian_

Additional Inherited Members
Protected Member Functions inherited from protocols::rotamer_recovery::RRProtocol
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRProtocolRelax::RRProtocolRelax

(

)

protocols::rotamer_recovery::RRProtocolRelax::~RRProtocolRelax ( )

overridedefault

protocols::rotamer_recovery::RRProtocolRelax::RRProtocolRelax ( RRProtocolRelax const &  )

default

Member Function Documentation

bool protocols::rotamer_recovery::RRProtocolRelax::get_cartesian

(

)

const

References cartesian_.

Referenced by get_parameters().

string protocols::rotamer_recovery::RRProtocolRelax::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

bool protocols::rotamer_recovery::RRProtocolRelax::get_nonideal

(

)

const

References nonideal_.

Referenced by get_parameters().

string protocols::rotamer_recovery::RRProtocolRelax::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

References get_cartesian(), and get_nonideal().

void protocols::rotamer_recovery::RRProtocolRelax::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  score_function, core::pack::task::PackerTask const &  packer_task  )

overridevirtual

apply FastRelax and measure rotamer recovery for each residue

Implements protocols::rotamer_recovery::RRProtocol.

References core::conformation::Residue::atom_is_backbone(), cartesian_, core::id::D, protocols::relax::generate_relax_from_cmd(), core::conformation::Residue::is_virtual(), protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery(), core::conformation::Residue::natoms(), nonideal_, core::pack::task::PackerTask::pack_residue(), protocols::antibody::design::relax, core::pose::Pose::replace_residue(), core::pose::Pose::residue(), core::conformation::Residue::set_chi(), core::pose::Pose::size(), and core::id::THETA.

void protocols::rotamer_recovery::RRProtocolRelax::set_cartesian

(

bool

setting

)

References cartesian_.

Referenced by protocols::features::RotamerRecoveryFeatures::parse_my_tag().

void protocols::rotamer_recovery::RRProtocolRelax::set_nonideal

(

bool

setting

)

References nonideal_.

Referenced by protocols::features::RotamerRecoveryFeatures::parse_my_tag().

Member Data Documentation

bool protocols::rotamer_recovery::RRProtocolRelax::cartesian_

private

Referenced by get_cartesian(), run(), and set_cartesian().

bool protocols::rotamer_recovery::RRProtocolRelax::nonideal_

private

Referenced by get_nonideal(), run(), and set_nonideal().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocolRelax.hh
• src/protocols/rotamer_recovery/RRProtocolRelax.cc