NMerSVMEnergy.cc File Reference

SVM sequence profile energy method implementation. More...

#include <core/scoring/nmer/NMerSVMEnergy.hh>
#include <core/scoring/nmer/NMerSVMEnergyCreator.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/nmer/NMerPSSMEnergy.hh>
#include <core/scoring/ScoringManager.hh>
#include <basic/database/open.hh>
#include <utility/file/file_sys_util.hh>
#include <string>
#include <vector>
#include <utility/string_util.hh>
#include <utility/libsvm/Svm_rosetta.hh>
#include <utility/vector1.hh>
#include <utility/pointer/memory.hh>
#include <utility/exit.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::methods

Functions
static basic::Tracer	TR ("core.scoring.methods.NMerSVMEnergy")

Detailed Description

SVM sequence profile energy method implementation.

Author

Indigo King (indig.nosp@m.o.c..nosp@m.king@.nosp@m.gmai.nosp@m.l.com)

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.titu.nosp@m.e.org) – Implemented lazy, one-time, threadsafe loading of all data read from files, and replaced reads of global options system with reads from local EnergyMethodsOptions class.

Function Documentation

static basic::Tracer TR ( "core.scoring.methods.NMerSVMEnergy"  )

static