#include <RestrictToAlignedSegments.hh>

Inheritance diagram for protocols::task_operations::RestrictToAlignedSegmentsOperation:

Public Types
typedef protocols::task_operations::RestrictOperationsBase	parent

Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation

typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP

typedef TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Public Member Functions
	RestrictToAlignedSegmentsOperation ()

	~RestrictToAlignedSegmentsOperation () override

core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...

void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...

void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...

utility::vector1< core::Size >	start_res () const

void	start_res (utility::vector1< core::Size > const &s)

utility::vector1< core::Size >	stop_res () const

void	stop_res (utility::vector1< core::Size > const &s)

core::Size	chain () const

void	chain (core::Size const c)

core::Real	repack_shell () const

void	repack_shell (core::Real const r)

Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()

	~RestrictOperationsBase () override

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static std::string	keyname ()

Private Attributes
utility::vector1< std::string >	segment_names_

utility::vector1 < core::pose::PoseOP >	source_pose_

utility::vector1< core::Size >	start_res_

utility::vector1< core::Size >	stop_res_

core::Size	chain_

core::Real	repack_shell_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef protocols::task_operations::RestrictOperationsBase protocols::task_operations::RestrictToAlignedSegmentsOperation::parent

Constructor & Destructor Documentation

protocols::task_operations::RestrictToAlignedSegmentsOperation::RestrictToAlignedSegmentsOperation ( )

protocols::task_operations::RestrictToAlignedSegmentsOperation::~RestrictToAlignedSegmentsOperation ( )

overridedefault

Member Function Documentation

void protocols::task_operations::RestrictToAlignedSegmentsOperation::apply	(	core::pose::Pose const &	,
		core::pack::task::PackerTask &
	)		const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::task_operations::RestrictOperationsBase.

References core::pack::task::operation::OperateOnCertainResidues::apply(), core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::rosetta_scripts::find_nearest_res(), protocols::mean_field::min(), core::pack::task::operation::OperateOnCertainResidues::op(), core::pack::task::operation::OperateOnCertainResidues::residue_indices(), protocols::rosetta_scripts::residue_packer_states(), and protocols::task_operations::TR().

core::Size protocols::task_operations::RestrictToAlignedSegmentsOperation::chain ( ) const

inline

References chain_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::chain ( core::Size const c )

inline

References core::pack::dunbrack::c, and chain_.

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictToAlignedSegmentsOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

std::string protocols::task_operations::RestrictToAlignedSegmentsOperation::keyname ( )

static

Referenced by protocols::task_operations::SeqprofConsensusOperation::create_complex_type_generator(), and protocols::task_operations::RestrictToAlignedSegmentsOperationCreator::keyname().

void protocols::task_operations::RestrictToAlignedSegmentsOperation::parse_tag	(	TagCOP	tag,
		DataMap &
	)

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References core::pose::parse_resnum(), core::import_pose::PDB_file, and core::import_pose::pose_from_file().

void protocols::task_operations::RestrictToAlignedSegmentsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::operation::complex_type_name_for_task_op(), and protocols::task_operations::rtas_subelement_ct_naming_function().

Referenced by protocols::task_operations::SeqprofConsensusOperation::create_complex_type_generator(), and protocols::task_operations::RestrictToAlignedSegmentsOperationCreator::provide_xml_schema().

core::Real protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( ) const

inline

References repack_shell_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( core::Real const r )

inline

References repack_shell_.

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res ( ) const

inline

References start_res_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res ( utility::vector1< core::Size > const & s )

inline

References start_res_.

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( ) const

inline

References stop_res_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( utility::vector1< core::Size > const & s )

inline

References stop_res_.

Member Data Documentation

core::Size protocols::task_operations::RestrictToAlignedSegmentsOperation::chain_

private

Referenced by chain().

core::Real protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell_

private

Referenced by repack_shell().

utility::vector1< std::string > protocols::task_operations::RestrictToAlignedSegmentsOperation::segment_names_

private

utility::vector1< core::pose::PoseOP > protocols::task_operations::RestrictToAlignedSegmentsOperation::source_pose_

private

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res_

private

Referenced by start_res().

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res_

private

Referenced by stop_res().

The documentation for this class was generated from the following files:

src/protocols/task_operations/RestrictToAlignedSegments.hh
src/protocols/task_operations/RestrictToAlignedSegments.cc

Public Types

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation