| apply(core::pose::Pose &pose) override | protocols::ligand_docking::TransformEnsemble | virtual |
| best_ligands_ | protocols::ligand_docking::TransformEnsemble | private |
| change_conformer(core::conformation::UltraLightResidue &ligand_residue, const core::conformation::UltraLightResidue &reference_residue, core::Size resid) | protocols::ligand_docking::TransformEnsemble | |
| change_conformers(utility::vector1< core::conformation::UltraLightResidue > &ligand_residues, const utility::vector1< core::conformation::UltraLightResidue > &reference_residues) | protocols::ligand_docking::TransformEnsemble | |
| check_grid(utility::vector1< core::conformation::UltraLightResidue > &ligand_residues, core::Real distance=0) | protocols::ligand_docking::TransformEnsemble | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::ligand_docking::TransformEnsemble | virtual |
| convert_to_full_pose(core::pose::Pose &pose, core::Size &best_pose_count) | protocols::ligand_docking::TransformEnsemble | |
| create() | protocols::moves::Mover | virtual |
| dump_conformer(core::conformation::UltraLightResidue const &residue, utility::io::ozstream &output) | protocols::ligand_docking::TransformEnsemble | |
| ensemble_proteins_ | protocols::ligand_docking::TransformEnsemble | private |
| fresh_instance() const override | protocols::ligand_docking::TransformEnsemble | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::ligand_docking::TransformEnsemble | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| grid_set_poses_ | protocols::ligand_docking::TransformEnsemble | private |
| grid_set_prototype_ | protocols::ligand_docking::TransformEnsemble | private |
| grid_sets_ | protocols::ligand_docking::TransformEnsemble | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initial_perturb_ | protocols::ligand_docking::TransformEnsemble | private |
| last_accepted_ligand_residues_ | protocols::ligand_docking::TransformEnsemble | private |
| last_accepted_reference_residues_ | protocols::ligand_docking::TransformEnsemble | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| ligand_conformers_ | protocols::ligand_docking::TransformEnsemble | private |
| ligand_residues_ | protocols::ligand_docking::TransformEnsemble | private |
| make_multi_pose_grids(core::Vector center) | protocols::ligand_docking::TransformEnsemble | |
| monte_carlo(core::Real ¤t, core::Real &last) | protocols::ligand_docking::TransformEnsemble | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::ligand_docking::TransformEnsemble | static |
| name() | protocols::moves::Mover | inlinestatic |
| optimize_until_score_is_negative_ | protocols::ligand_docking::TransformEnsemble | private |
| output_sampled_space_ | protocols::ligand_docking::TransformEnsemble | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override | protocols::ligand_docking::TransformEnsemble | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| print_xyz(core::Vector vector) | protocols::ligand_docking::TransformEnsemble | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | protocols::ligand_docking::TransformEnsemble | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::ligand_docking::TransformEnsemble | static |
| reference_residues_ | protocols::ligand_docking::TransformEnsemble | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sampled_space_file_ | protocols::ligand_docking::TransformEnsemble | private |
| score_ligands(utility::vector1< core::conformation::UltraLightResidue > &ligand_residues) | protocols::ligand_docking::TransformEnsemble | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| transform_info_ | protocols::ligand_docking::TransformEnsemble | private |
| transform_ligand(utility::vector1< core::conformation::UltraLightResidue > &ligand_residues, utility::vector1< core::conformation::UltraLightResidue > &reference_residues) | protocols::ligand_docking::TransformEnsemble | |
| TransformEnsemble() | protocols::ligand_docking::TransformEnsemble | |
| TransformEnsemble(protocols::qsar::scoring_grid::GridSetCOP grid_set_prototype, utility::vector1< std::string > const &chains, core::Real const &box_size, core::Real const &move_distance, core::Real const &angle, core::Size const &cycles, core::Real const &temp) | protocols::ligand_docking::TransformEnsemble | |
| TransformEnsemble(TransformEnsemble const &other) | protocols::ligand_docking::TransformEnsemble | |
| translate_ligand(utility::vector1< core::conformation::UltraLightResidue > &ligand_residues, utility::vector1< core::conformation::UltraLightResidue > &reference_residues, core::Real distance) | protocols::ligand_docking::TransformEnsemble | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| use_conformers_ | protocols::ligand_docking::TransformEnsemble | private |
| use_main_model_ | protocols::ligand_docking::TransformEnsemble | private |
| weighted_center(utility::vector1< core::conformation::UltraLightResidue > &residues) | protocols::ligand_docking::TransformEnsemble | |
| ~TransformEnsemble() override | protocols::ligand_docking::TransformEnsemble | |
1.8.7