protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy Member List

This is the complete list of members for protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy, including all inherited members.

atomic_interaction_cutoff() const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
clone() const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
Distance typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
EnergyMap typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
EnergyMethodOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(Pose &pose, ScoreFunction const &, EnergyMap &totals) const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
HelixPairingSetOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
hhpot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
hspot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
HSSTripletSetOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
NatbiasHelicesSheetPotentialOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
NatbiasHelixPairPotentialOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
NatbiasSecondaryStructureEnergy()	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
NatbiasSecondaryStructureEnergy(NatbiasSecondaryStructureEnergy const &src)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
NatbiasStrandPairPotentialOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
native_secstruct(String const &secstruct)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
native_secstruct_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
parent typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
Pose typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
Real typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
score_types() const	core::scoring::methods::EnergyMethod	inline
ScoreFunction typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_helices_sheet_pot(HSSTripletSetOP const hss3set)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_helices_sheet_pot(NatbiasHelicesSheetPotentialOP const hspot)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_hpairpot(HelixPairingSetOP const hpairset)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_hpairpot(NatbiasHelixPairPotentialOP const hhpot)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_spairpot(StrandPairingSetOP const spairset)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_natbias_spairpot(NatbiasStrandPairPotentialOP const sspot)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(Pose &pose, ScoreFunction const &scorefxn) const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
sspot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
StrandPairingSetOP typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
String typedef	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
use_hhpot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
use_hspot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
use_nobias(bool const b)	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	inline
use_nobias_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
use_sspot_	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	private
version() const override	protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy	virtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline