protocols::task_operations::ReadResfileFromDB Class Reference

#include <ReadResfileFromDB.hh>

Inheritance diagram for protocols::task_operations::ReadResfileFromDB:

Public Types
typedef core::pack::task::operation::TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	ReadResfileFromDB ()
	ReadResfileFromDB (utility::sql_database::sessionOP db_session, std::string const &database_table)
	ReadResfileFromDB (ReadResfileFromDB const &src)
	~ReadResfileFromDB () override
core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	db_session (utility::sql_database::sessionOP db_session)
void	database_table (std::string const &database_table)
std::string const &	database_table () const
void	selection_tag (std::string const &setting)
std::string const &	selection_tag () const
void	residue_selector (core::select::residue_selector::ResidueSelectorCOP const &sel)
core::select::residue_selector::ResidueSelectorCOP	residue_selector () const
void	parse_tag (utility::tag::TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
std::string	database_table_
std::string	selection_tag_
utility::sql_database::sessionOP	db_session_
core::select::residue_selector::ResidueSelectorCOP	residue_selector_

Member Typedef Documentation

typedef core::pack::task::operation::TaskOperation protocols::task_operations::ReadResfileFromDB::parent

Constructor & Destructor Documentation

protocols::task_operations::ReadResfileFromDB::ReadResfileFromDB

(

)

protocols::task_operations::ReadResfileFromDB::ReadResfileFromDB	(	utility::sql_database::sessionOP	db_session,
		std::string const &	database_table
	)

protocols::task_operations::ReadResfileFromDB::ReadResfileFromDB ( ReadResfileFromDB const &  src )

default

protocols::task_operations::ReadResfileFromDB::~ReadResfileFromDB ( )

overridedefault

Member Function Documentation

void protocols::task_operations::ReadResfileFromDB::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References protocols::jd2::current_input_tag(), database_table_, db_session_, protocols::pack_daemon::error_message, core::pack::task::parse_resfile_string(), residue_selector_, selection_tag(), selection_tag_, core::pose::Pose::size(), and protocols::task_operations::TR().

TaskOperationOP protocols::task_operations::ReadResfileFromDB::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

void protocols::task_operations::ReadResfileFromDB::database_table

(

std::string const &

database_table

)

References database_table(), and database_table_.

std::string const & protocols::task_operations::ReadResfileFromDB::database_table

(

)

const

References database_table_.

Referenced by database_table().

void protocols::task_operations::ReadResfileFromDB::db_session

(

utility::sql_database::sessionOP

db_session

)

References db_session_.

static std::string protocols::task_operations::ReadResfileFromDB::keyname ( )

inlinestatic

Referenced by protocols::task_operations::ReadResfileFromDBCreator::keyname(), and provide_xml_schema().

void protocols::task_operations::ReadResfileFromDB::parse_tag ( utility::tag::TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References database_table_, db_session_, protocols::pack_daemon::error_message, core::select::residue_selector::get_residue_selector(), protocols::rosetta_scripts::parse_database_session(), residue_selector(), residue_selector_, and selection_tag().

void protocols::task_operations::ReadResfileFromDB::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::rosetta_scripts::attributes_for_parse_database_session(), core::select::residue_selector::attributes_for_parse_residue_selector(), keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::ReadResfileFromDBCreator::provide_xml_schema().

void protocols::task_operations::ReadResfileFromDB::residue_selector

(

core::select::residue_selector::ResidueSelectorCOP const &

sel

)

References residue_selector_.

core::select::residue_selector::ResidueSelectorCOP protocols::task_operations::ReadResfileFromDB::residue_selector

(

)

const

References residue_selector_.

Referenced by parse_tag().

void protocols::task_operations::ReadResfileFromDB::selection_tag

(

std::string const &

setting

)

References selection_tag_.

std::string const & protocols::task_operations::ReadResfileFromDB::selection_tag

(

)

const

References selection_tag_.

Referenced by apply(), and parse_tag().

Member Data Documentation

std::string protocols::task_operations::ReadResfileFromDB::database_table_

private

Referenced by apply(), database_table(), and parse_tag().

utility::sql_database::sessionOP protocols::task_operations::ReadResfileFromDB::db_session_

private

Referenced by apply(), db_session(), and parse_tag().

core::select::residue_selector::ResidueSelectorCOP protocols::task_operations::ReadResfileFromDB::residue_selector_

private

Referenced by apply(), parse_tag(), and residue_selector().

std::string protocols::task_operations::ReadResfileFromDB::selection_tag_

private

Referenced by apply(), and selection_tag().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/ReadResfileFromDB.hh
• src/protocols/task_operations/ReadResfileFromDB.cc