| abego() const | protocols::denovo_design::components::Segment | |
| abego(SegmentResid const segment_resid) const | protocols::denovo_design::components::Segment | |
| abego_ | protocols::denovo_design::components::Segment | private |
| add_lower_padding() | protocols::denovo_design::components::Segment | |
| add_upper_padding() | protocols::denovo_design::components::Segment | |
| clear() | protocols::denovo_design::components::Segment | private |
| clone() const | protocols::denovo_design::components::Segment | virtual |
| contains(core::Size const pose_resid) const | protocols::denovo_design::components::Segment | |
| cterm_included() const | protocols::denovo_design::components::Segment | inline |
| cterm_included_ | protocols::denovo_design::components::Segment | private |
| cutpoint() const | protocols::denovo_design::components::Segment | |
| cutpoint_ | protocols::denovo_design::components::Segment | private |
| cutpoint_segment() const | protocols::denovo_design::components::Segment | |
| delete_lower_padding() | protocols::denovo_design::components::Segment | |
| delete_residue(SegmentResid const segment_resid) | protocols::denovo_design::components::Segment | |
| delete_residues(core::Size const local_resnum_start, core::Size const local_resnum_stop) | protocols::denovo_design::components::Segment | private |
| delete_upper_padding() | protocols::denovo_design::components::Segment | |
| elem_length() const | protocols::denovo_design::components::Segment | |
| extend(std::string const &secstruct, std::string const &abego) | protocols::denovo_design::components::Segment | |
| has_free_lower_terminus() const | protocols::denovo_design::components::Segment | inline |
| has_free_upper_terminus() const | protocols::denovo_design::components::Segment | inline |
| has_lower_residue() const | protocols::denovo_design::components::Segment | |
| has_template_pose() const | protocols::denovo_design::components::Segment | |
| has_upper_residue() const | protocols::denovo_design::components::Segment | |
| id() const | protocols::denovo_design::components::Segment | |
| id_ | protocols::denovo_design::components::Segment | private |
| length() const | protocols::denovo_design::components::Segment | |
| local_to_pose(core::Size const local_resid) const | protocols::denovo_design::components::Segment | private |
| local_to_segment(core::Size const local_resid) const | protocols::denovo_design::components::Segment | private |
| lower() const | protocols::denovo_design::components::Segment | |
| lower_dihedrals() const | protocols::denovo_design::components::Segment | |
| lower_dihedrals_ | protocols::denovo_design::components::Segment | private |
| lower_local() const | protocols::denovo_design::components::Segment | |
| lower_padding() const | protocols::denovo_design::components::Segment | |
| lower_residue() const | protocols::denovo_design::components::Segment | |
| lower_residue_ | protocols::denovo_design::components::Segment | private |
| lower_segment() const | protocols::denovo_design::components::Segment | inline |
| lower_segment_ | protocols::denovo_design::components::Segment | private |
| movable_group() const | protocols::denovo_design::components::Segment | |
| movable_group_ | protocols::denovo_design::components::Segment | private |
| n_residues_after_cutpoint() const | protocols::denovo_design::components::Segment | |
| n_residues_before_cutpoint() const | protocols::denovo_design::components::Segment | |
| nterm_included() const | protocols::denovo_design::components::Segment | inline |
| nterm_included_ | protocols::denovo_design::components::Segment | private |
| operator<<(std::ostream &os, Segment const &res) | protocols::denovo_design::components::Segment | friend |
| parse_motif(std::string const &motif_str) | protocols::denovo_design::components::Segment | |
| parse_tag(utility::tag::TagCOP tag) | protocols::denovo_design::components::Segment | |
| pose_to_local(core::Size const pose_resid) const | protocols::denovo_design::components::Segment | private |
| pose_to_segment(core::Size const pose_resid) const | protocols::denovo_design::components::Segment | |
| posestart_ | protocols::denovo_design::components::Segment | private |
| safe() const | protocols::denovo_design::components::Segment | |
| safe_segment() const | protocols::denovo_design::components::Segment | |
| saferes_ | protocols::denovo_design::components::Segment | private |
| Segment(std::string const &id_val) | protocols::denovo_design::components::Segment | |
| Segment(std::string const &id_val, std::string const &ss_val, std::string const &abego_val, bool const start_inc, bool const stop_inc) | protocols::denovo_design::components::Segment | |
| segment_to_local(SegmentResid const segment_resid) const | protocols::denovo_design::components::Segment | |
| segment_to_pose(SegmentResid const segment_resid) const | protocols::denovo_design::components::Segment | |
| set_abego(std::string const &abego_str) | protocols::denovo_design::components::Segment | |
| set_abego(utility::vector1< std::string > const &abego) | protocols::denovo_design::components::Segment | |
| set_cterm_included(bool const inc) | protocols::denovo_design::components::Segment | inline |
| set_cutpoint(SegmentResid const segment_resid) | protocols::denovo_design::components::Segment | |
| set_id(std::string const &id_val) | protocols::denovo_design::components::Segment | |
| set_lower_dihedrals(ResidueDihedrals const &dih) | protocols::denovo_design::components::Segment | inline |
| set_lower_residue(core::conformation::ResidueCOP rsd) | protocols::denovo_design::components::Segment | inline |
| set_lower_segment(std::string const &comp) | protocols::denovo_design::components::Segment | |
| set_movable_group(core::Size const mg) | protocols::denovo_design::components::Segment | |
| set_nterm_included(bool const inc) | protocols::denovo_design::components::Segment | inline |
| set_pose_start(core::Size const pose_resid) | protocols::denovo_design::components::Segment | |
| set_safe(SegmentResid const segment_resid) | protocols::denovo_design::components::Segment | |
| set_ss(SegmentResid const segment_resid, char ss_type) | protocols::denovo_design::components::Segment | |
| set_ss(std::string const &secstruct) | protocols::denovo_design::components::Segment | inline |
| set_template_pose(core::pose::Pose const &template_pose, core::Size const start_resid, core::Size const stop_resid) | protocols::denovo_design::components::Segment | |
| set_upper_dihedrals(ResidueDihedrals const &dih) | protocols::denovo_design::components::Segment | inline |
| set_upper_residue(core::conformation::ResidueCOP rsd) | protocols::denovo_design::components::Segment | inline |
| set_upper_segment(std::string const &comp) | protocols::denovo_design::components::Segment | |
| ss() const | protocols::denovo_design::components::Segment | |
| ss_ | protocols::denovo_design::components::Segment | private |
| start() const | protocols::denovo_design::components::Segment | |
| start_local() const | protocols::denovo_design::components::Segment | |
| stop() const | protocols::denovo_design::components::Segment | |
| stop_local() const | protocols::denovo_design::components::Segment | |
| template_pose() const | protocols::denovo_design::components::Segment | |
| template_pose_ | protocols::denovo_design::components::Segment | private |
| template_resid(SegmentResid const segment_resid) const | protocols::denovo_design::components::Segment | private |
| upper() const | protocols::denovo_design::components::Segment | |
| upper_dihedrals() const | protocols::denovo_design::components::Segment | |
| upper_dihedrals_ | protocols::denovo_design::components::Segment | private |
| upper_local() const | protocols::denovo_design::components::Segment | |
| upper_padding() const | protocols::denovo_design::components::Segment | |
| upper_residue() const | protocols::denovo_design::components::Segment | |
| upper_residue_ | protocols::denovo_design::components::Segment | private |
| upper_segment() const | protocols::denovo_design::components::Segment | inline |
| upper_segment_ | protocols::denovo_design::components::Segment | private |
| ~Segment() override | protocols::denovo_design::components::Segment | inline |
1.8.7