RamaPreProEnergy.cc File Reference

A variation on the Ramachandran scorefunction that has separate probability tables for residues that precede prolines. More...

#include <core/energy_methods/RamaPreProEnergy.hh>
#include <core/energy_methods/RamaPreProEnergyCreator.hh>
#include <core/scoring/RamaPrePro.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/AA.hh>
#include <core/id/DOF_ID.hh>
#include <core/id/TorsionID.hh>
#include <core/id/PartialAtomID.hh>
#include <core/chemical/AtomType.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/scoring/PolymerBondedEnergyContainer.hh>
#include <core/scoring/Energies.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <basic/basic.hh>
#include <basic/database/open.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <numeric/constants.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/deriv/angle_deriv.hh>
#include <numeric/deriv/distance_deriv.hh>
#include <numeric/deriv/dihedral_deriv.hh>
#include <numeric/NumericTraits.hh>
#include <numeric/angle.functions.hh>
#include <core/scoring/DerivVectorPair.hh>
#include <iostream>
#include <utility/vector1.hh>
#include <core/pose/PDBInfo.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::energy_methods

Functions
static basic::Tracer	core::energy_methods::TR ("core.energy_methods.RamaPreProEnergy")

Detailed Description

A variation on the Ramachandran scorefunction that has separate probability tables for residues that precede prolines.

Author

Frank DiMaio Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – not the original author, but modified this to work with D-amino acids, BACKBONE_AA amino acids, and cyclic geometry. Refactored greatly to support arbitrary heteropolymer building blocks with any number of mainchain torsions.