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protocols::genetic_algorithm::GeneticAlgorithmBase Member List

This is the complete list of members for protocols::genetic_algorithm::GeneticAlgorithmBase, including all inherited members.

add_entity(EntityElements const &traits)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
add_entity(EntityOP entity)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
add_parent_entity(EntityElements const &traits)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
add_parent_entity(EntityOP entity)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
add_parents_from_current_generation()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
best_entities(core::Size num)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
best_fitness_from_current_generation() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
checkpoint_gzip_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
checkpoint_prefix_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
checkpoint_rename_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
checkpoint_write_interval() const protocols::genetic_algorithm::GeneticAlgorithmBaseprotected
checkpoint_write_interval_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
clear_parents()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
complete()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
curr_gen_entities_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
curr_gen_entity(core::Size index)protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation() const protocols::genetic_algorithm::GeneticAlgorithmBaseinline
current_generation_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
current_generation_begin()protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_begin() const protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_complete()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
current_generation_end()protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_end() const protocols::genetic_algorithm::GeneticAlgorithmBase
entities_checkpoint_filename(std::string suffix="") const protocols::genetic_algorithm::GeneticAlgorithmBase
entity_cache()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
entity_cache() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
entity_cache_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
entity_randomizer_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
entity_template() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
entity_template_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
EntityCAP typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
EntityCAPs typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
EntityCOP typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
EntityCOPs typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
EntityOP typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
EntityRandomizerOP typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
evolve_next_generation()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
fill_by_crossover(core::Size size=0)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
fill_by_mutation(core::Size size=0)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
fill_with_perturbations_of_existing_entities(core::Size size=0)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
fill_with_random_entities(core::Size size=0)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
fraction_by_recombination() const protocols::genetic_algorithm::GeneticAlgorithmBaseinline
fraction_by_recombination_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
generations() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
generations_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
generations_checkpoint_filename(std::string suffix="") const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
GeneticAlgorithmBase()protocols::genetic_algorithm::GeneticAlgorithmBase
max_generations() const protocols::genetic_algorithm::GeneticAlgorithmBaseinline
max_generations_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
max_population_size() const protocols::genetic_algorithm::GeneticAlgorithmBaseinline
max_population_size_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
new_entity()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
number_to_propagate() const protocols::genetic_algorithm::GeneticAlgorithmBaseinline
number_to_propagate_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
parent_entities_protocols::genetic_algorithm::GeneticAlgorithmBaseprivate
pop_const_const_iter typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
pop_const_iter typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
pop_iter typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
population(core::Size gen_num) const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
print_cache(std::ostream &) const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
print_generation_statistics(std::ostream &os, core::Size gen_num) const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
print_population(std::ostream &) const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
propagate_best_from_previous_generation(core::Size size=1, bool unique=true)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
read_checkpoint()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
read_entities_checkpoint(bool overwrite=false)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
read_generations_checkpoint()protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
rename_checkpoint_files() const protocols::genetic_algorithm::GeneticAlgorithmBase
set_checkpoint_gzip(bool b)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_checkpoint_prefix(std::string const &p)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_checkpoint_rename(bool b)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_checkpoint_write_interval(core::Size i)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_entity_template(EntityCOP entity)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
set_frac_by_recomb(core::Real f)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_max_generations(core::Size s)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
set_max_pop_size(core::Size s)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_num_to_propagate(core::Size s)protocols::genetic_algorithm::GeneticAlgorithmBaseinlinevirtual
set_rand(EntityRandomizerOP r)protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
tournament_select(utility::vector1< EntityCOP > const &pvec) const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
TraitEntityHashMap typedefprotocols::genetic_algorithm::GeneticAlgorithmBase
write_entities_checkpoint() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
write_generations_checkpoint() const protocols::genetic_algorithm::GeneticAlgorithmBasevirtual
~GeneticAlgorithmBase() overrideprotocols::genetic_algorithm::GeneticAlgorithmBase
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