protocols::task_operations::LinkResidues Class Reference

#include <LinkResidues.hh>

Inheritance diagram for protocols::task_operations::LinkResidues:

Public Types
typedef core::Size	Size
typedef std::string	String
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
typedef utility::tag::TagCOP	TagCOP
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	LinkResidues ()
	~LinkResidues () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	remap_allowed_residues_to_template (core::pose::Pose const &pose, core::pack::rotamer_set::RotamerLinksOP &links) const
void	add_group (std::string group)
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
utility::vector1< std::string >	allGroups_
std::string	template_group_

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef core::pack::task::PackerTask protocols::task_operations::LinkResidues::PackerTask

typedef TaskOperation protocols::task_operations::LinkResidues::parent

typedef core::Size protocols::task_operations::LinkResidues::Size

typedef std::string protocols::task_operations::LinkResidues::String

typedef utility::tag::TagCOP protocols::task_operations::LinkResidues::TagCOP

typedef core::pack::task::operation::TaskOperation protocols::task_operations::LinkResidues::TaskOperation

typedef core::pack::task::operation::TaskOperationOP protocols::task_operations::LinkResidues::TaskOperationOP

Constructor & Destructor Documentation

protocols::task_operations::LinkResidues::LinkResidues ( )

default

protocols::task_operations::LinkResidues::~LinkResidues ( )

overridedefault

Member Function Documentation

void protocols::task_operations::LinkResidues::add_group

(

std::string

group

)

void protocols::task_operations::LinkResidues::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::sequence::end, core::pose::get_resnum_list_ordered(), core::pack::task::PackerTask::rotamer_links(), core::pose::Pose::size(), and protocols::task_operations::TR().

core::pack::task::operation::TaskOperationOP protocols::task_operations::LinkResidues::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::LinkResidues::keyname ( )

inlinestatic

Referenced by protocols::task_operations::LinkResiduesCreator::keyname().

void protocols::task_operations::LinkResidues::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References protocols::task_operations::TR().

void protocols::task_operations::LinkResidues::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::pack::task::operation::complex_type_name_for_task_op(), and protocols::task_operations::linkres_subelement_ctname().

Referenced by protocols::task_operations::LinkResiduesCreator::provide_xml_schema().

void protocols::task_operations::LinkResidues::remap_allowed_residues_to_template	(	core::pose::Pose const &	pose,
		core::pack::rotamer_set::RotamerLinksOP &	links
	)		const

References core::pose::get_resnum_list_ordered(), and core::pose::Pose::total_residue().

Member Data Documentation

utility::vector1< std::string > protocols::task_operations::LinkResidues::allGroups_

private

std::string protocols::task_operations::LinkResidues::template_group_

private

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/LinkResidues.hh
• src/protocols/task_operations/LinkResidues.cc