protocols::flxbb::LayerDesignOperation Member List

This is the complete list of members for protocols::flxbb::LayerDesignOperation, including all inherited members.

add_helix_capping_	protocols::flxbb::LayerDesignOperation	private
add_layer(std::string const &layer_name, core::pack::task::operation::TaskOperationOP task, LayerOperationType const operation, LayerSpecificationType const specification)	protocols::flxbb::LayerDesignOperation
apply(Pose const &pose, PackerTask &task) const override	protocols::flxbb::LayerDesignOperation	virtual
blueprint_	protocols::flxbb::LayerDesignOperation	private
clone() const override	protocols::flxbb::LayerDesignOperation	virtual
copy_layer_residues(std::string const &src_layer, std::string const &dest_layer)	protocols::flxbb::LayerDesignOperation
DataMap typedef	core::pack::task::operation::TaskOperation
DESIGN enum value	protocols::flxbb::LayerDesignOperation
design_layer(bool const dsgn_core, bool const dsgn_boundary, bool const dsgn_surface)	protocols::flxbb::LayerDesignOperation
design_layer_	protocols::flxbb::LayerDesignOperation	private
DESIGNABLE enum value	protocols::flxbb::LayerDesignOperation
FIXED enum value	protocols::flxbb::LayerDesignOperation
get_restrictions(std::string const &layer, std::string const &default_layer, std::string const &ss_type, char const current_aa) const	protocols::flxbb::LayerDesignOperation	private
get_restrictions(std::string const &layer, std::string const &, std::string const &ss_type) const	protocols::flxbb::LayerDesignOperation	private
ignore_pikaa_natro() const	protocols::flxbb::LayerDesignOperation	inline
ignore_pikaa_natro_	protocols::flxbb::LayerDesignOperation	private
keyname()	protocols::flxbb::LayerDesignOperation	inlinestatic
Layer typedef	protocols::flxbb::LayerDesignOperation
layer_operation_	protocols::flxbb::LayerDesignOperation	private
layer_residues(std::string const &layer_name, std::string const &ss_name) const	protocols::flxbb::LayerDesignOperation
layer_residues_	protocols::flxbb::LayerDesignOperation	private
layer_specification_	protocols::flxbb::LayerDesignOperation	private
LayerDefinition typedef	protocols::flxbb::LayerDesignOperation
LayerDefinitions typedef	protocols::flxbb::LayerDesignOperation
LayerDesignOperation()	protocols::flxbb::LayerDesignOperation
LayerDesignOperation(bool dsgn_core, bool dsgn_boundary, bool dsgn_surface)	protocols::flxbb::LayerDesignOperation
LayerDesignOperation(bool dsgn_core, bool dsgn_boundary, bool dsgn_surface, bool Nt, bool Ct, Real core_score, Real surf_score, std::string coreAA, std::string boundaryAA, std::string surfaceAA)	protocols::flxbb::LayerDesignOperation
LayerDesignOperation(LayerDesignOperation const &rval)	protocols::flxbb::LayerDesignOperation
LayerOperationType enum name	protocols::flxbb::LayerDesignOperation
LayerResidues typedef	protocols::flxbb::LayerDesignOperation
LayerSpecificationType enum name	protocols::flxbb::LayerDesignOperation
make_pymol_script(bool value)	protocols::flxbb::LayerDesignOperation	inline
make_pymol_script_	protocols::flxbb::LayerDesignOperation	private
NO_DESIGN enum value	protocols::flxbb::LayerDesignOperation
OMIT enum value	protocols::flxbb::LayerDesignOperation
PACKABLE enum value	protocols::flxbb::LayerDesignOperation
PackerTask typedef	protocols::flxbb::LayerDesignOperation
parent typedef	protocols::flxbb::LayerDesignOperation
parse_layer_secstruct_tag(TagCOP secstruct_tag, DataMap &datamap, std::string const &layer_name)	protocols::flxbb::LayerDesignOperation
parse_layer_tag(TagCOP layer_tag, DataMap &datamap)	protocols::flxbb::LayerDesignOperation
parse_tag(TagCOP tag, DataMap &) override	protocols::flxbb::LayerDesignOperation	virtual
pore_radius(Real ps)	protocols::flxbb::LayerDesignOperation
pos2select(utility::vector1< core::Size > const &pos) const	protocols::flxbb::LayerDesignOperation	private
Pose typedef	protocols::flxbb::LayerDesignOperation
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::pack::task::operation::TaskOperation	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::flxbb::LayerDesignOperation	static
Real typedef	protocols::flxbb::LayerDesignOperation
repack_non_designed_residues_	protocols::flxbb::LayerDesignOperation	private
restrict_restypes_	protocols::flxbb::LayerDesignOperation	private
sasa_core(Real const r, String const &ss="")	protocols::flxbb::LayerDesignOperation
sasa_surface(Real const r, String const &ss="")	protocols::flxbb::LayerDesignOperation
set_default_layer_residues()	protocols::flxbb::LayerDesignOperation	private
set_design_layers(utility::vector1< std::string > const &layers)	protocols::flxbb::LayerDesignOperation
set_ignore_pikaa_natro(bool const val)	protocols::flxbb::LayerDesignOperation	inline
set_layer_operation(std::string const &layer_name, LayerOperationType const operation)	protocols::flxbb::LayerDesignOperation
set_layer_residues(std::string const &layer_name, std::string const &ss_name, std::string const &residues)	protocols::flxbb::LayerDesignOperation
set_layer_residues(std::string const &layer_name, std::string const &ss_name, std::string const &residues, LayerResidues &layer_residues)	protocols::flxbb::LayerDesignOperation	private
set_layer_specification(std::string const &layer_name, LayerSpecificationType const specification)	protocols::flxbb::LayerDesignOperation
set_restrict_restypes(bool const b)	protocols::flxbb::LayerDesignOperation	inline
set_sc_neighbor_angle_exponent(core::Real const &value)	protocols::flxbb::LayerDesignOperation
set_sc_neighbor_angle_shift_factor(core::Real const &value)	protocols::flxbb::LayerDesignOperation
set_sc_neighbor_denominator(core::Real const &value)	protocols::flxbb::LayerDesignOperation
set_sc_neighbor_dist_exponent(core::Real const &value)	protocols::flxbb::LayerDesignOperation
set_sc_neighbor_dist_midpoint(core::Real const &value)	protocols::flxbb::LayerDesignOperation
set_use_sidechain_neighbors(bool const value)	protocols::flxbb::LayerDesignOperation
set_use_symmetry(bool const val)	protocols::flxbb::LayerDesignOperation	inlineprivate
set_verbose(bool const b)	protocols::flxbb::LayerDesignOperation	inline
srbl_	protocols::flxbb::LayerDesignOperation	private
SS_TYPES	protocols::flxbb::LayerDesignOperation	static
String typedef	protocols::flxbb::LayerDesignOperation
TagCOP typedef	protocols::flxbb::LayerDesignOperation
task_layers_	protocols::flxbb::LayerDesignOperation	private
TaskLayer typedef	protocols::flxbb::LayerDesignOperation
TaskLayers typedef	protocols::flxbb::LayerDesignOperation
TaskOperation typedef	protocols::flxbb::LayerDesignOperation
TaskOperationOP typedef	protocols::flxbb::LayerDesignOperation
use_original_	protocols::flxbb::LayerDesignOperation	private
use_original_seq()	protocols::flxbb::LayerDesignOperation	inline
use_symmetry() const	protocols::flxbb::LayerDesignOperation	inlineprivate
use_symmetry_	protocols::flxbb::LayerDesignOperation	private
verbose_	protocols::flxbb::LayerDesignOperation	private
write_pymol_script(Pose const &pos, core::select::util::SelectResiduesByLayerOP srbl, std::map< std::string, utility::vector1< bool > > const &layer_specification, bool las_ligand, std::string const &filename) const	protocols::flxbb::LayerDesignOperation	private
~LayerDesignOperation() override	protocols::flxbb::LayerDesignOperation
~TaskOperation() override	core::pack::task::operation::TaskOperation