PairScoringScheme.hh File Reference

class definition for a given scoring scheme for an alignment. More...

#include <core/types.hh>
#include <core/sequence/Sequence.fwd.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/PairScoringScheme.fwd.hh>
#include <utility/vector1_bool.hh>

Classes
class	core::sequence::PairScoringScheme

Namespaces
	core
	A class for reading in the atom type properties.
	core::sequence

Detailed Description

class definition for a given scoring scheme for an alignment.

Scoring scheme based on comparing sequence columns based on the additive combination of several ScoringScheme objects.

Author

James Thompson