MembraneEnergyLandscapeSampler.cc File Reference

Sample a protein energy landscape as a function of orientation in the membrane. More...

#include <protocols/membrane_benchmark/MembraneEnergyLandscapeSampler.hh>
#include <protocols/membrane_benchmark/MembraneEnergyLandscapeSamplerCreator.hh>
#include <protocols/membrane/TransformIntoMembraneMover.hh>
#include <protocols/membrane/TranslationRotationMover.hh>
#include <protocols/membrane/util.hh>
#include <core/pose/Pose.hh>
#include <core/types.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/ImplicitLipidInfo.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/util.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <numeric/conversions.hh>
#include <numeric/constants.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/down_cast.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <cstdlib>
#include <ostream>
#include <fstream>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::membrane_benchmark

Functions
static basic::Tracer	TR ("protocols.membrane_benchmark.MembraneEnergyLandscapeSampler")
std::ostream &	protocols::membrane_benchmark::operator<< (std::ostream &os, MembraneEnergyLandscapeSampler const &mover)
	private methods /// More...

Detailed Description

Sample a protein energy landscape as a function of orientation in the membrane.

Orientation is sampled as a function of two degrees of freedom: helix tilt relative to the membrane normal and distance between the membrane center and peptide residue center of mass.

Author

Rebecca F. Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Function Documentation

static basic::Tracer TR ( "protocols.membrane_benchmark.MembraneEnergyLandscapeSampler"  )

static