core::scoring::trie::RotamerTrie< AT, CPDATA > Class Template Reference

#include <RotamerTrie.hh>

Inheritance diagram for core::scoring::trie::RotamerTrie< AT, CPDATA >:

Public Member Functions
	RotamerTrie (typename utility::vector1< RotamerDescriptor< AT, CPDATA > > &rotamers, Distance const atomic_interaction_cutoff_distance)
	~RotamerTrie () override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-trie type resolution functions. More...
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, etable::TableLookupEvaluator const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, etable::TableLookupEvaluator const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, etable::AnalyticEtableEvaluator const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, etable::AnalyticEtableEvaluator const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, hbonds::HBondEnergy const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, hbonds::HBondEnergy const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, elec::electrie::ElecTrieEvaluator const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, elec::electrie::ElecTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, elec::electrie::ElecTrieEvaluator const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, lkball::lkbtrie::LKBTrieEvaluator const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, lkball::lkbtrie::LKBTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, lkball::lkbtrie::LKBTrieEvaluator const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	mm lj inter type resolution functions More...
void	resolve_trie_vs_trie (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, methods::MMLJEnergyInter const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, methods::MMLJEnergyInter const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	VDW_Energy type resolution functions. More...
void	resolve_trie_vs_trie (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_trie (RotamerTrieBase const &, TrieCountPairBase &, vdwaals::VDWTrieEvaluator const &, ObjexxFCL::FArray2D< core::PackerEnergy > &, ObjexxFCL::FArray2D< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
	Four trie-vs-path type resolution functions. More...
void	resolve_trie_vs_path (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector, TrieVsTrieCachedDataContainerBase const *const cached_data) const override
void	resolve_trie_vs_path (RotamerTrieBase const &, TrieCountPairBase &, vdwaals::VDWTrieEvaluator const &, utility::vector1< core::PackerEnergy > &, utility::vector1< core::PackerEnergy > &, TrieVsTrieCachedDataContainerBase const *const ) const override
void	print () const override
	END Type Resolution Functions. More...
Size	num_heavy_atoms () const
	Accessors. More...
Size	num_unique_rotamers () const
Size	max_branch_depth () const
Size	max_heavyatom_depth () const
Size	max_atom_depth () const
utility::vector1< TrieNode< AT, CPDATA > > const &	atoms () const
utility::vector1< Size > const &	total_rotamers_2_unique_rotamers () const
Public Member Functions inherited from core::scoring::trie::RotamerTrieBase
	~RotamerTrieBase () override
void	set_resid_2_connection_entry (Size resid, Size connid)
bool	connection_exists_to_residue (Size resid) const
Size	connection_id_for_residue (Size resid) const
Size	get_count_pair_data_for_residue (Size other_residue) const
Public Member Functions inherited from core::conformation::AbstractRotamerTrie
	~AbstractRotamerTrie () override=default

Private Member Functions
void	construct_rotamer_trie (typename utility::vector1< RotamerDescriptor< AT, CPDATA > > &rotamers, Distance const interaction_distance)
void	add_atom_to_trie (Size trie_atom_id, RotamerDescriptorAtom< AT, CPDATA > const &rdatom)
	wow, this function used to be 100 lines long... count pair was such a beast! More...
void	compute_max_branch_depth ()
void	calculate_num_rotamers_in_subtree ()
void	calculate_subtree_containing_radii (Distance const interaction_distance)

Private Attributes
utility::vector1< TrieNode< AT, CPDATA > >	trie_
Size	num_total_atoms_
Size	num_heavyatoms_
Size	max_atoms_per_rotamer_
Size	num_unique_rotamers_
Size	num_total_rotamers_
utility::vector1< Size >	total_rotamers_2_unique_rotamers_
Size	max_branch_depth_
Size	max_heavyatom_depth_
Size	max_atom_depth_

Constructor & Destructor Documentation

template<class AT, class CPDATA>

core::scoring::trie::RotamerTrie< AT, CPDATA >::RotamerTrie ( typename utility::vector1< RotamerDescriptor< AT, CPDATA > > &  rotamers, Distance const  atomic_interaction_cutoff_distance  )

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

core::scoring::trie::RotamerTrie< AT, CPDATA >::~RotamerTrie ( )

inlineoverride

Member Function Documentation

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::add_atom_to_trie ( Size  trie_atom_id, RotamerDescriptorAtom< AT, CPDATA > const &  rdatom  )

inlineprivate

wow, this function used to be 100 lines long... count pair was such a beast!

References core::scoring::trie::RotamerDescriptorAtom< AT, CPDAT >::atom(), core::scoring::trie::RotamerDescriptorAtom< AT, CPDAT >::cp_data(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

utility::vector1< TrieNode< AT, CPDATA > > const& core::scoring::trie::RotamerTrie< AT, CPDATA >::atoms ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree ( )

inlineprivate

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atoms_per_rotamer_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_, and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii ( Distance const  interaction_distance )

inlineprivate

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atoms_per_rotamer_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_, and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth ( )

inlineprivate

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atoms_per_rotamer_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_, and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie ( typename utility::vector1< RotamerDescriptor< AT, CPDATA > > &  rotamers, Distance const  interaction_distance  )

inlineprivate

References core::scoring::trie::RotamerTrie< AT, CPDATA >::add_atom_to_trie(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii(), core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atom_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atoms_per_rotamer_, core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_heavyatoms_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_rotamers_, core::scoring::trie::RotamerTrie< AT, CPDATA >::num_unique_rotamers_, core::scoring::trie::RotamerTrie< AT, CPDATA >::total_rotamers_2_unique_rotamers_, and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::RotamerTrie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atom_depth ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atom_depth_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_heavy_atoms ( ) const

inline

Accessors.

References core::scoring::trie::RotamerTrie< AT, CPDATA >::num_heavyatoms_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_unique_rotamers ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::num_unique_rotamers_.

Referenced by core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::print ( ) const

inlineoverridevirtual

END Type Resolution Functions.

Useful Functions

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_, and core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , etable::TableLookupEvaluator const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , etable::AnalyticEtableEvaluator const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the coarse etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &  other, TrieCountPairBase &  cp, hbonds::HBondEnergy const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , hbonds::HBondEnergy const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , core::scoring::trie::TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when hbond energy function get mixed up with non-hbond tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , elec::electrie::ElecTrieEvaluator const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , core::scoring::trie::TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , lkball::lkbtrie::LKBTrieEvaluator const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , core::scoring::trie::TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , methods::MMLJEnergyInter const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_path ( RotamerTrieBase const &  , TrieCountPairBase &  , vdwaals::VDWTrieEvaluator const &  , utility::vector1< core::PackerEnergy > &  , utility::vector1< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , etable::TableLookupEvaluator const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , etable::AnalyticEtableEvaluator const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the coarse etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &  other, TrieCountPairBase &  cp, hbonds::HBondEnergy const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , hbonds::HBondEnergy const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when hbond energy function get mixed up with non-hbond tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< elec::electrie::ElecAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , elec::electrie::ElecTrieEvaluator const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< lkball::lkbtrie::LKBAtom, etable::etrie::CountPairDataGeneric > const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , lkball::lkbtrie::LKBTrieEvaluator const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , methods::MMLJEnergyInter const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrie< vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::TrieCountPairBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::resolve_trie_vs_trie ( RotamerTrieBase const &  , TrieCountPairBase &  , vdwaals::VDWTrieEvaluator const &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , ObjexxFCL::FArray2D< core::PackerEnergy > &  , TrieVsTrieCachedDataContainerBase const *  const  ) const

inlineoverridevirtual

This function is called when the etable energy function get mixed up with non-vdwatom tries. It produces a utility_exit call.

Implements core::scoring::trie::RotamerTrieBase.

template<class AT, class CPDATA>

utility::vector1< Size > const& core::scoring::trie::RotamerTrie< AT, CPDATA >::total_rotamers_2_unique_rotamers ( ) const

inline

References core::scoring::trie::RotamerTrie< AT, CPDATA >::total_rotamers_2_unique_rotamers_.

Referenced by core::scoring::trie::trie_vs_path(), and core::scoring::trie::trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, hbonds::HBondEnergy const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, core::scoring::trie::TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, utility::vector1< core::PackerEnergy > &  pair_energy_vector, utility::vector1< core::PackerEnergy > &  temp_vector, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-path type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, etable::TableLookupEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Four trie-vs-trie type resolution functions.

Type Resolution Functions

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, etable::AnalyticEtableEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, hbonds::HBondEnergy const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, elec::electrie::ElecTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Hack Elec E ////////////////////// Four trie-vs-trie type resolution functions

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, lkball::lkbtrie::LKBTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, methods::MMLJEnergyInter const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

mm lj inter type resolution functions

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

template<class AT, class CPDATA>

void core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie ( RotamerTrieBase const &  other, TrieCountPairBase &  cp, vdwaals::VDWTrieEvaluator const &  sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &  pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &  temp_table, TrieVsTrieCachedDataContainerBase const *const  cached_data  ) const

inlineoverridevirtual

VDW_Energy type resolution functions.

Implements core::scoring::trie::RotamerTrieBase.

References core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie().

Member Data Documentation

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atom_depth_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atom_depth().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_atoms_per_rotamer_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii(), core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii(), core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::max_branch_depth().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::max_heavyatom_depth().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_heavyatoms_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::num_heavy_atoms().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_atoms_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii(), core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::print().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_total_rotamers_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie().

template<class AT, class CPDATA>

Size core::scoring::trie::RotamerTrie< AT, CPDATA >::num_unique_rotamers_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::num_unique_rotamers().

template<class AT, class CPDATA>

utility::vector1< Size > core::scoring::trie::RotamerTrie< AT, CPDATA >::total_rotamers_2_unique_rotamers_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::total_rotamers_2_unique_rotamers().

template<class AT, class CPDATA>

utility::vector1< TrieNode< AT, CPDATA > > core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_

private

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::add_atom_to_trie(), core::scoring::trie::RotamerTrie< AT, CPDATA >::atoms(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_num_rotamers_in_subtree(), core::scoring::trie::RotamerTrie< AT, CPDATA >::calculate_subtree_containing_radii(), core::scoring::trie::RotamerTrie< AT, CPDATA >::compute_max_branch_depth(), core::scoring::trie::RotamerTrie< AT, CPDATA >::construct_rotamer_trie(), and core::scoring::trie::RotamerTrie< AT, CPDATA >::print().

---

The documentation for this class was generated from the following files:

• src/core/scoring/trie/RotamerTrie.fwd.hh
• src/core/scoring/trie/RotamerTrie.hh