| apply(core::pose::Pose &pose) override | protocols::pose_creation::MakeJunctionsMover | virtual |
| assign_seq(core::pose::Pose &pose, std::string n_term_seq, std::string c_term_seq) | protocols::pose_creation::MakeJunctionsMover | |
| attach_next_part(core::pose::Pose &pose, std::string attach_termini, std::string attach_description) | protocols::pose_creation::MakeJunctionsMover | |
| chain_ | protocols::pose_creation::MakeJunctionsMover | private |
| check_all_junctions_good(MakeJunctionsMover::Design design) | protocols::pose_creation::MakeJunctionsMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::pose_creation::MakeJunctionsMover | virtual |
| create() | protocols::moves::Mover | virtual |
| design_q_ | protocols::pose_creation::MakeJunctionsMover | private |
| designs_fn_ | protocols::pose_creation::MakeJunctionsMover | private |
| fresh_instance() const override | protocols::pose_creation::MakeJunctionsMover | virtual |
| generate_start_pose(core::pose::Pose &pose, core::pose::Pose &background_pose, std::string attach_description) | protocols::pose_creation::MakeJunctionsMover | |
| get_additional_output() override | protocols::pose_creation::MakeJunctionsMover | virtual |
| get_and_cache_pdb(std::string pdb_location) | protocols::pose_creation::MakeJunctionsMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::pose_creation::MakeJunctionsMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| junction_failure_set_ | protocols::pose_creation::MakeJunctionsMover | private |
| junction_rmsd_thresh_ | protocols::pose_creation::MakeJunctionsMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| line_to_design(std::string line) | protocols::pose_creation::MakeJunctionsMover | |
| make_pose_from_design(MakeJunctionsMover::Design design, core::pose::PoseOP &return_pose) | protocols::pose_creation::MakeJunctionsMover | |
| MakeJunctionsMover() | protocols::pose_creation::MakeJunctionsMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::pose_creation::MakeJunctionsMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| parse_attach_description(std::string attach_description, std::string &pdb_location, char &chain, core::Size &n_term_trim, core::Size &c_term_trim, core::Size &n_repeats, core::Size &n_term_attach_length, core::Size &c_term_attach_length, std::string &n_term_seq, std::string &c_term_seq) | protocols::pose_creation::MakeJunctionsMover | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override | protocols::pose_creation::MakeJunctionsMover | virtual |
| pdb_cache_ | protocols::pose_creation::MakeJunctionsMover | private |
| pdb_cache_bool_ | protocols::pose_creation::MakeJunctionsMover | private |
| pdb_cache_max_size_ | protocols::pose_creation::MakeJunctionsMover | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::pose_creation::MakeJunctionsMover | static |
| read_in_designs() | protocols::pose_creation::MakeJunctionsMover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| sfxn_ | protocols::pose_creation::MakeJunctionsMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trim_pose(core::pose::Pose &pose, core::Size n_term_trim, core::Size c_term_trim) | protocols::pose_creation::MakeJunctionsMover | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
1.8.7