protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer Class Reference

#include <LegacyCalciumMotifScorer.hh>

Inheritance diagram for protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer:

Public Member Functions
	LegacyCalciumMotifScorer ()
	default construct More...
	~LegacyCalciumMotifScorer () override
core::Real	score (legacy_sewing::AssemblyCOP assembly) override
core::Real	full_motif_score (legacy_sewing::AssemblyCOP assembly)
Public Member Functions inherited from protocols::legacy_sewing::scoring::LegacyMotifScorer
	LegacyMotifScorer ()
	default construct More...
	~LegacyMotifScorer () override
core::Real	score (AssemblyCOP assembly) override
core::Real	norm_motif_score (AssemblyCOP assembly)
core::Real	full_motif_score (AssemblyCOP assembly)
numeric::xyzTransform< core::Real >	get_stub (utility::vector1< SewSegment > const &segments, core::Size segment_num, core::Size resnum) const
core::Real	get_score (numeric::xyzTransform< core::Real > stub1, char ss1, char aa1, numeric::xyzTransform< core::Real > stub2, char ss2, char aa2) const
void	dump_motif (AssemblyCOP assembly) const
Public Member Functions inherited from protocols::legacy_sewing::scoring::LegacyAssemblyScorer
	LegacyAssemblyScorer ()
	default construct More...
	~LegacyAssemblyScorer () override

Additional Inherited Members
Protected Attributes inherited from protocols::legacy_sewing::scoring::LegacyMotifScorer
core::scoring::motif::MotifHashManager &	mman_
core::chemical::ResidueTypeSetCOP	res_type_set_

Constructor & Destructor Documentation

protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::LegacyCalciumMotifScorer

(

)

default construct

protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::~LegacyCalciumMotifScorer ( )

inlineoverride

Member Function Documentation

core::Real protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::full_motif_score

(

legacy_sewing::AssemblyCOP

assembly

)

use Will's Motif score to calculate the motif score for interactions between a given segment and segments from other models. Divide by total number of segments

References protocols::legacy_sewing::CHIMERA_SEGMENT, protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(), protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(), protocols::legacy_sewing::POSE_SEGMENT, protocols::legacy_sewing::scoring::LegacyMotifScorer::res_type_set_, and score().

Referenced by score().

core::Real protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::score ( legacy_sewing::AssemblyCOP  assembly )

overridevirtual

Use the negative normalized motif score

Implements protocols::legacy_sewing::scoring::LegacyAssemblyScorer.

References full_motif_score().

Referenced by full_motif_score().

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The documentation for this class was generated from the following files:

• src/protocols/legacy_sewing/scoring/LegacyCalciumMotifScorer.hh
• src/protocols/legacy_sewing/scoring/LegacyCalciumMotifScorer.cc