protocols::denovo_design::task_operations Namespace Reference

Classes
class	AAFrequencies
class	AAFrequency
class	ConsensusLoopDatabase
class	ConsensusLoopDesignOperation
class	ConsensusLoopDesignOperationCreator
struct	LoopInfo
struct	SurroundingSS

Typedefs
typedef utility::pointer::shared_ptr < ConsensusLoopDesignOperation >	ConsensusLoopDesignOperationOP
typedef utility::pointer::shared_ptr < ConsensusLoopDesignOperation const >	ConsensusLoopDesignOperationCOP
typedef utility::pointer::shared_ptr < AAFrequency const >	AAFrequencyOP
typedef utility::pointer::shared_ptr < AAFrequency const >	AAFrequencyCOP
typedef utility::vector1 < AAFrequencies >	LoopAAs
typedef utility::vector1 < LoopInfo >	LoopInfoVec

Functions
utility::vector1< bool >	make_aa_bitmap_from_forbidden_aas (std::string const &forbidden_aas)
utility::vector1< bool >	make_aa_bitmap_from_allowed_aas (std::string const &allowed_aas)
std::ostream &	operator<< (std::ostream &os, SurroundingSS const &ss)
std::ostream &	operator<< (std::ostream &os, LoopInfo const &info)

Typedef Documentation

typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyCOP

typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyOP

typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation const > protocols::denovo_design::task_operations::ConsensusLoopDesignOperationCOP

typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation > protocols::denovo_design::task_operations::ConsensusLoopDesignOperationOP

typedef utility::vector1< AAFrequencies > protocols::denovo_design::task_operations::LoopAAs

typedef utility::vector1< LoopInfo > protocols::denovo_design::task_operations::LoopInfoVec

Function Documentation

utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_allowed_aas

(

std::string const &

allowed_aas

)

References core::chemical::aa_from_oneletter_code(), and core::chemical::num_canonical_aas.

Referenced by protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas().

utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_forbidden_aas

(

std::string const &

forbidden_aas

)

References core::chemical::aa_from_oneletter_code(), and core::chemical::num_canonical_aas.

Referenced by protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas().

std::ostream& protocols::denovo_design::task_operations::operator<<	(	std::ostream &	os,
		SurroundingSS const &	ss
	)

References protocols::denovo_design::task_operations::SurroundingSS::after, and protocols::denovo_design::task_operations::SurroundingSS::before.

std::ostream & protocols::denovo_design::task_operations::operator<<	(	std::ostream &	os,
		LoopInfo const &	info
	)

References protocols::denovo_design::task_operations::LoopInfo::abego, protocols::denovo_design::task_operations::SurroundingSS::after, protocols::denovo_design::task_operations::SurroundingSS::before, protocols::denovo_design::task_operations::LoopInfo::ss_around, and protocols::denovo_design::task_operations::LoopInfo::startres.