core::conformation::membrane Namespace Reference

Classes
class	AqueousPoreParameters
	A class for defining an aqueous pore. More...
class	EXCN_Illegal_Arguments
class	EXCN_Membrane
	Parent Exception - Exception Membrane. More...
class	EXCN_Membrane_Bounds
	Membrane Out of Bounds Exception. More...
class	EXCN_MembraneFoldTree
	Fold tree Exception for membrane proteins. More...
class	EXCN_NonMembrane
	Non Membrane Pose Exception. More...
class	EXCN_Resource_Definition
	Resource Manager Exception. More...
class	EXCN_VirtualRsd
	Virtual Residue Definition Exception. More...
class	ImplicitLipidInfo
	Definition of an implicit membrane with parameters for different lipid compositions. More...
class	MembraneInfo
	Data describing the relationship between protein(s) and a membrane environment. More...
class	Span
class	SpanningTopology

Typedefs
typedef utility::vector1 < numeric::CubicPolynomial >	piecewise_poly
typedef utility::pointer::shared_ptr < AqueousPoreParameters >	AqueousPoreParametersOP
typedef utility::pointer::shared_ptr < AqueousPoreParameters const >	AqueousPoreParametersCOP
typedef utility::pointer::shared_ptr < ImplicitLipidInfo >	ImplicitLipidInfoOP
typedef utility::pointer::shared_ptr < ImplicitLipidInfo const >	ImplicitLipidInfoCOP
typedef utility::pointer::shared_ptr < MembraneInfo >	MembraneInfoOP
typedef utility::pointer::shared_ptr < MembraneInfo const >	MembraneInfoCOP
typedef utility::pointer::shared_ptr < Span >	SpanOP
typedef utility::pointer::shared_ptr < Span const >	SpanCOP
typedef utility::pointer::shared_ptr < SpanningTopology >	SpanningTopologyOP
typedef utility::pointer::shared_ptr < SpanningTopology const >	SpanningTopologyCOP

Enumerations
enum	MEM { thickness = 1, center = 2, normal = 3 }
enum	Orientation { in = 1, out = 2 }
	Define the orientation of a secondary structure span relative to the membrane. More...

Functions
std::ostream &	operator<< (std::ostream &os, MembraneInfo const &mem_info)
	Show MembraneInfo method for pyrosetta. More...
std::ostream &	operator<< (std::ostream &os, SpanningTopology const &spans)
	Show Spanning topology. More...
utility::vector1< std::string >	spanfile_names ()
std::string	spanfile_name ()

Typedef Documentation

typedef utility::pointer::shared_ptr< AqueousPoreParameters const > core::conformation::membrane::AqueousPoreParametersCOP

typedef utility::pointer::shared_ptr< AqueousPoreParameters > core::conformation::membrane::AqueousPoreParametersOP

typedef utility::pointer::shared_ptr< ImplicitLipidInfo const > core::conformation::membrane::ImplicitLipidInfoCOP

typedef utility::pointer::shared_ptr< ImplicitLipidInfo > core::conformation::membrane::ImplicitLipidInfoOP

typedef utility::pointer::shared_ptr< MembraneInfo const > core::conformation::membrane::MembraneInfoCOP

typedef utility::pointer::shared_ptr< MembraneInfo > core::conformation::membrane::MembraneInfoOP

typedef utility::vector1< numeric::CubicPolynomial > core::conformation::membrane::piecewise_poly

typedef utility::pointer::shared_ptr< Span const > core::conformation::membrane::SpanCOP

typedef utility::pointer::shared_ptr< SpanningTopology const > core::conformation::membrane::SpanningTopologyCOP

typedef utility::pointer::shared_ptr< SpanningTopology > core::conformation::membrane::SpanningTopologyOP

typedef utility::pointer::shared_ptr< Span > core::conformation::membrane::SpanOP

Enumeration Type Documentation

enum core::conformation::membrane::MEM

Enumerator
thickness
center
normal

enum core::conformation::membrane::Orientation

Define the orientation of a secondary structure span relative to the membrane.

Enumerator
in
out

Function Documentation

std::ostream & core::conformation::membrane::operator<<	(	std::ostream &	os,
		MembraneInfo const &	mem_info
	)

Show MembraneInfo method for pyrosetta.

References core::conformation::membrane::MembraneInfo::membrane_rsd_num(), and core::conformation::membrane::MembraneInfo::spanning_topology().

std::ostream & core::conformation::membrane::operator<<	(	std::ostream &	os,
		SpanningTopology const &	spans
	)

Show Spanning topology.

For PyRosetta!

References core::conformation::membrane::SpanningTopology::get_spans(), in, and core::conformation::membrane::SpanningTopology::nspans().

std::string core::conformation::membrane::spanfile_name

(

)

References spanfile_names().

utility::vector1< std::string > core::conformation::membrane::spanfile_names

(

)

Referenced by protocols::docking::membrane::MPDockingSetupMover::read_spanfiles(), and spanfile_name().