| apply(core::pose::Pose &pose) override | protocols::backrub::BackrubProtocol | virtual |
| backrubmover_ | protocols::backrub::BackrubProtocol | private |
| BackrubProtocol() | protocols::backrub::BackrubProtocol | |
| BackrubProtocol(BackrubProtocol const &bp) | protocols::backrub::BackrubProtocol | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::backrub::BackrubProtocol | virtual |
| create() | protocols::moves::Mover | virtual |
| finalize_setup(core::pose::Pose &pose) | protocols::backrub::BackrubProtocol | private |
| fresh_instance() const override | protocols::backrub::BackrubProtocol | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::backrub::BackrubProtocol | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_pivot_residues() const | protocols::backrub::BackrubProtocol | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initial_pack_ | protocols::backrub::BackrubProtocol | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| main_task_factory_ | protocols::backrub::BackrubProtocol | private |
| max_atoms_ | protocols::backrub::BackrubProtocol | private |
| mc_kt_ | protocols::backrub::BackrubProtocol | private |
| min_atoms_ | protocols::backrub::BackrubProtocol | private |
| minimize_movemap_ | protocols::backrub::BackrubProtocol | private |
| mm_bend_weight_ | protocols::backrub::BackrubProtocol | private |
| movemap_smallmover_ | protocols::backrub::BackrubProtocol | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::backrub::BackrubProtocol | static |
| name() | protocols::moves::Mover | inlinestatic |
| ntrials_ | protocols::backrub::BackrubProtocol | private |
| packing_operation_ | protocols::backrub::BackrubProtocol | private |
| packrotamersmover_ | protocols::backrub::BackrubProtocol | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) override | protocols::backrub::BackrubProtocol | virtual |
| pivot_atoms_ | protocols::backrub::BackrubProtocol | private |
| pivot_residues_ | protocols::backrub::BackrubProtocol | private |
| pivots_residue_selector_ | protocols::backrub::BackrubProtocol | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::backrub::BackrubProtocol | static |
| read_cmd_line_options() | protocols::backrub::BackrubProtocol | private |
| recover_low_ | protocols::backrub::BackrubProtocol | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sc_prob_ | protocols::backrub::BackrubProtocol | private |
| sc_prob_uniform_ | protocols::backrub::BackrubProtocol | private |
| sc_prob_withinrot_ | protocols::backrub::BackrubProtocol | private |
| scorefxn_ | protocols::backrub::BackrubProtocol | private |
| set_backrub_mover(protocols::backrub::BackrubMoverOP backrub_mover) | protocols::backrub::BackrubProtocol | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_movemap(core::kinematics::MoveMapCOP movemap) | protocols::backrub::BackrubProtocol | |
| set_movemap_smallmover(core::kinematics::MoveMapCOP movemap) | protocols::backrub::BackrubProtocol | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(utility::vector1< core::Size > pivot_residues, utility::vector1< std::string > pivot_atoms, core::kinematics::MoveMapCOP minimize_movemap, core::kinematics::MoveMapCOP movemap_smallmover, core::pack::task::operation::TaskOperationCOP packing_operation, core::Size min_atoms, core::Size max_atoms, bool initial_pack, core::Real mm_bend_weight, core::Real sm_prob, core::Real sc_prob, core::Real sc_prob_uniform, core::Real sc_prob_withinrot, core::Real mc_kt, core::Size ntrials, bool trajectory, bool trajectory_gz, core::Size trajectory_stride) | protocols::backrub::BackrubProtocol | private |
| set_pivot_atoms(utility::vector1< std::string > pivot_atoms) | protocols::backrub::BackrubProtocol | |
| set_pivot_residues(utility::vector1< core::Size > pivot_residues) | protocols::backrub::BackrubProtocol | |
| set_pivots_from_residue_subset(core::select::residue_selector::ResidueSubset residue_subset) | protocols::backrub::BackrubProtocol | |
| set_scorefunction(core::scoring::ScoreFunctionCOP scorefxn) | protocols::backrub::BackrubProtocol | |
| set_taskfactory(core::pack::task::TaskFactoryCOP tf) | protocols::backrub::BackrubProtocol | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| sidechainmover_ | protocols::backrub::BackrubProtocol | private |
| sm_prob_ | protocols::backrub::BackrubProtocol | private |
| smallmover_ | protocols::backrub::BackrubProtocol | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trajectory_ | protocols::backrub::BackrubProtocol | private |
| trajectory_apply_mover_ | protocols::backrub::BackrubProtocol | private |
| trajectory_gz_ | protocols::backrub::BackrubProtocol | private |
| trajectory_stride_ | protocols::backrub::BackrubProtocol | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| write_database() | protocols::backrub::BackrubProtocol | |
| ~BackrubProtocol() override | protocols::backrub::BackrubProtocol | |
1.8.7