| angles_ | core::scoring::sasa::LeGrandSasa | private |
| calc_atom_masks(conformation::Residue const &irsd, conformation::Residue const &jrsd, Real const probe_radius, Real const cutoff_distance, utility::vector1< Real > const &radii, id::AtomID_Map< bool > const &atom_subset, id::AtomID_Map< utility::vector1< ObjexxFCL::ubyte > > &atom_mask) const | core::scoring::sasa::LeGrandSasa | |
| calculate(const pose::Pose &pose, const id::AtomID_Map< bool > &atom_subset, id::AtomID_Map< Real > &atom_sasa, utility::vector1< Real > &rsd_sasa) override | core::scoring::sasa::LeGrandSasa | virtual |
| get_2way_orientation(Vector const &a_xyz, Vector const &b_xyz, int &phi_a2b_index, int &theta_a2b_index, int &phi_b2a_index, int &theta_b2a_index, Real distance_ijxyz) const | core::scoring::sasa::LeGrandSasa | |
| get_angles() const | core::scoring::sasa::LeGrandSasa | |
| get_masks() const | core::scoring::sasa::LeGrandSasa | |
| get_name() const override | core::scoring::sasa::LeGrandSasa | virtual |
| get_orientation(Vector const &a_xyz, Vector const &b_xyz, int &phi_index, int &theta_index, Real distance_ijxyz) const | core::scoring::sasa::LeGrandSasa | |
| get_overlap(Real const radius_a, Real const radius_b, Real const distance_ijxyz, int °ree_of_overlap) const | core::scoring::sasa::LeGrandSasa | |
| include_probe_radius_ | core::scoring::sasa::SasaMethod | protected |
| init() | core::scoring::sasa::LeGrandSasa | private |
| is_polar_atom(core::conformation::Residue const &rsd, core::Size const atom_index) | core::scoring::sasa::SasaMethod | static |
| LeGrandSasa(Real probe_radius, SasaRadii radii_set) | core::scoring::sasa::LeGrandSasa | |
| list_sasa_method_hp_modes() | core::scoring::sasa::SasaMethod | static |
| maskbits_ | core::scoring::sasa::LeGrandSasa | private |
| masks_ | core::scoring::sasa::LeGrandSasa | private |
| num_bytes_ | core::scoring::sasa::LeGrandSasa | private |
| num_orientations_ | core::scoring::sasa::LeGrandSasa | private |
| num_overlaps_ | core::scoring::sasa::LeGrandSasa | private |
| num_phi_ | core::scoring::sasa::LeGrandSasa | private |
| num_theta_ | core::scoring::sasa::LeGrandSasa | private |
| print_dot_bit_string(utility::vector1< ObjexxFCL::ubyte > &values) const | core::scoring::sasa::LeGrandSasa | private |
| probe_radius_ | core::scoring::sasa::SasaMethod | protected |
| radii_set_ | core::scoring::sasa::SasaMethod | protected |
| read_angles() | core::scoring::sasa::LeGrandSasa | private |
| read_masks() | core::scoring::sasa::LeGrandSasa | private |
| sasa_method_hp_mode() const | core::scoring::sasa::SasaMethod | inline |
| sasa_metric_mode_from_name(std::string const &mode_name) | core::scoring::sasa::SasaMethod | static |
| sasa_metric_name_from_mode(SasaMethodHPMode const mode) | core::scoring::sasa::SasaMethod | static |
| SasaMethod(Real probe_radius, SasaRadii radii_set) | core::scoring::sasa::SasaMethod | |
| set_include_probe_radius_in_calc(bool include_probe_radius) | core::scoring::sasa::SasaMethod | |
| set_probe_radius(Real probe_radius) | core::scoring::sasa::SasaMethod | |
| set_radii_set(SasaRadii radii_set) | core::scoring::sasa::SasaMethod | |
| set_sasa_method_hp_mode(SasaMethodHPMode const mode_in) | core::scoring::sasa::SasaMethod | |
| set_use_big_polar_hydrogen(bool big_polar_h) | core::scoring::sasa::SasaMethod | |
| skip_atom(core::conformation::Residue const &rsd, core::Size const atom_index, SasaMethodHPMode const hp_mode) | core::scoring::sasa::SasaMethod | static |
| use_big_polar_H_ | core::scoring::sasa::SasaMethod | protected |
| ~LeGrandSasa() override | core::scoring::sasa::LeGrandSasa | |
| ~SasaMethod() override | core::scoring::sasa::SasaMethod | |
1.8.7