PeptideDeriverFilter.hh File Reference

A filter that, for each dimer in a pose, outputs the peptide which contributes most to the interface. More...

#include <protocols/peptide_deriver/PeptideDeriverFilter.fwd.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <core/scoring/ScoreFunction.hh>
#include <protocols/filters/Filter.hh>
#include <utility/io/orstream.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.fwd.hh>
#include <iosfwd>
#include <string>

Classes
class	protocols::peptide_deriver::CyclizedPeptideInfo
class	protocols::peptide_deriver::DerivedPeptideEntry
class	protocols::peptide_deriver::PeptideDeriverFilter
	implementation of the Peptiderive protocol - given a pose, it evaluates the binding energy of linear stretches, of given lengths, and indicates which of these contributes more than others to the interaction energy. It also reports on and optionally models cyclizable peptides. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::peptide_deriver

Enumerations
enum	protocols::peptide_deriver::PeptideDeriverEntryType { protocols::peptide_deriver::ET_GENERAL, protocols::peptide_deriver::ET_BEST_LINEAR, protocols::peptide_deriver::ET_BEST_CYCLIC }
	an enum specifying whether the peptide entry encountered during the sliding window run in known to be the "best" peptide, when calling PeptideDeriverOuputter::peptide_entry() More...
enum	protocols::peptide_deriver::PeptideDeriverReportFormat { protocols::peptide_deriver::PRF_MARKDOWN, protocols::peptide_deriver::PRF_BASIC }
	the output format that PeptideDeriverFilter reports in More...
enum	protocols::peptide_deriver::CyclizationMethod { protocols::peptide_deriver::CYCLIZATION_METHOD_DISULFIDE =0, protocols::peptide_deriver::CYCLIZATION_METHOD_END_TO_END, protocols::peptide_deriver::NUM_CYCLIZATION_METHODS }

Variables
const std::string	protocols::peptide_deriver::CYCLIZATION_METHOD_NAMES [NUM_CYCLIZATION_METHODS] = { "disulfide", "end-to-end" }
const core::Real	protocols::peptide_deriver::UNLIKELY_ISC_VALUE = 2e6

Detailed Description

A filter that, for each dimer in a pose, outputs the peptide which contributes most to the interface.