protocols::qsar::scoring_grid::SiteGrid Member List

This is the complete list of members for protocols::qsar::scoring_grid::SiteGrid, including all inherited members.

atom_score(core::conformation::UltraLightResidue const &residue, core::Size atomno, qsarMapCOP qsar_map) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
atom_score(core::conformation::Residue const &residue, core::Size atomno, qsarMapCOP qsar_map) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
atr_radius_	protocols::qsar::scoring_grid::SiteGrid	private
atr_weight_	protocols::qsar::scoring_grid::SiteGrid	private
clone() const override	protocols::qsar::scoring_grid::SiteGrid	virtual
deserialize(utility::json_spirit::mObject data) override	protocols::qsar::scoring_grid::SiteGrid	virtual
diffuse_ring(core::Vector const &coords, core::Real radius, core::Real width, core::Real magnitude)	protocols::qsar::scoring_grid::SingleGrid
dump_BRIX(std::string const &prefix) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
fill_with_value(core::Real)	protocols::qsar::scoring_grid::SingleGrid
get_center() const	protocols::qsar::scoring_grid::SingleGrid
get_chain()	protocols::qsar::scoring_grid::SingleGrid
get_dimensions()	protocols::qsar::scoring_grid::SingleGrid
get_grid() const	protocols::qsar::scoring_grid::SingleGrid
get_max_value() const	protocols::qsar::scoring_grid::SingleGrid
get_min_value() const	protocols::qsar::scoring_grid::SingleGrid
get_pdb_coords(int x, int y, int z)	protocols::qsar::scoring_grid::SingleGrid
get_pdb_coords(core::grid::CartGrid< core::Real >::GridPt gridpt)	protocols::qsar::scoring_grid::SingleGrid
get_point(core::Real x, core::Real y, core::Real z) const	protocols::qsar::scoring_grid::SingleGrid
get_point(core::Vector coords) const	protocols::qsar::scoring_grid::SingleGrid
get_point_value_list_within_range(core::Real lower_bound, core::Real upper_bound, core::Size stride) const	protocols::qsar::scoring_grid::SingleGrid
get_type() const override	protocols::qsar::scoring_grid::SingleGrid	virtual
grid_name()	protocols::qsar::scoring_grid::SiteGrid	static
grid_to_kin(utility::io::ozstream &out, core::Real min_val, core::Real max_val, core::Size stride)	protocols::qsar::scoring_grid::SingleGrid
GridBase()	protocols::qsar::scoring_grid::GridBase	inline
hash_fingerprint() const override	protocols::qsar::scoring_grid::SiteGrid	virtual
initialize(core::Vector const &center, core::Real width, core::Real resolution) override	protocols::qsar::scoring_grid::SingleGrid	virtual
is_in_grid(core::conformation::UltraLightResidue const &residue) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
is_in_grid(core::conformation::Residue const &residue) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
parse_my_tag(utility::tag::TagCOP tag) override	protocols::qsar::scoring_grid::SiteGrid	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::qsar::scoring_grid::SiteGrid	static
refresh(core::pose::Pose const &pose, core::Vector const &center, core::Size const &ligand_chain_id_to_exclude) override	protocols::qsar::scoring_grid::SiteGrid	virtual
refresh(core::pose::Pose const &pose, core::Vector const &center) override	protocols::qsar::scoring_grid::SiteGrid	virtual
refresh(core::pose::Pose const &pose, core::Vector const &center, utility::vector1< core::Size > ligand_chain_ids_to_exclude) override	protocols::qsar::scoring_grid::SiteGrid	virtual
rep_radius_	protocols::qsar::scoring_grid::SiteGrid	private
rep_weight_	protocols::qsar::scoring_grid::SiteGrid	private
score(core::conformation::UltraLightResidue const &residue, core::Real const max_score, qsarMapCOP qsar_map) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
score(core::conformation::Residue const &residue, core::Real const max_score, qsarMapCOP qsar_map) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
serialize() const override	protocols::qsar::scoring_grid::SiteGrid	virtual
set_center(core::Vector center)	protocols::qsar::scoring_grid::SingleGrid
set_chain(char chain) override	protocols::qsar::scoring_grid::SingleGrid	virtual
set_distance_sphere_for_atom(core::Real const &atom_shell, core::Vector const &coords, core::Real cutoff)	protocols::qsar::scoring_grid::SingleGrid
set_point(core::Vector const &coords, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_ring(core::Vector const &coords, core::Real inner_radius, core::Real outer_radius, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_score_sphere_for_atom(numeric::interpolation::spline::InterpolatorCOP lj_spline, core::Vector const &coords, core::Real cutoff)	protocols::qsar::scoring_grid::SingleGrid
set_sphere(core::Vector const &coords, core::Real radius, core::Real value)	protocols::qsar::scoring_grid::SingleGrid
set_type(std::string type)	protocols::qsar::scoring_grid::SingleGrid
show(std::ostream &out) const override	protocols::qsar::scoring_grid::SingleGrid	virtual
SingleGrid(std::string const &type)	protocols::qsar::scoring_grid::SingleGrid
SiteGrid()	protocols::qsar::scoring_grid::SiteGrid
sites_	protocols::qsar::scoring_grid::SiteGrid	private
~GridBase() override	protocols::qsar::scoring_grid::GridBase	inline
~SingleGrid() override	protocols::qsar::scoring_grid::SingleGrid
~SiteGrid() override	protocols::qsar::scoring_grid::SiteGrid