refinable_lattice.cc File Reference

protocols for folding into density More...

#include <protocols/cryst/refinable_lattice_creator.hh>
#include <protocols/cryst/refinable_lattice.hh>
#include <protocols/constraint_movers/ConstraintSetMover.hh>
#include <protocols/cryst/cryst_rms.hh>
#include <protocols/cryst/spacegroup.hh>
#include <protocols/cryst/util.hh>
#include <protocols/cryst/wallpaper.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <protocols/viewer/viewers.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/symmetry/MirrorSymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/util.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/types.hh>
#include <basic/datacache/CacheableString.hh>
#include <basic/datacache/CacheableStringMap.hh>
#include <numeric/model_quality/rms.hh>
#include <numeric/random/random_xyz.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <basic/basic.hh>
#include <basic/database/open.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/options/after_opts.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/optimization.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray3D.hh>
#include <ObjexxFCL/format.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::cryst

Macros
#define	DEG2RAD   0.0174532925199433
#define	RAD2DEG   57.295779513082323

Functions
static basic::Tracer	protocols::cryst::TR ("protocols.cryst.refinable_lattice")
core::Real	protocols::cryst::getMW (core::pose::Pose const &pose)
core::Real	protocols::cryst::getVolume (core::Real A, core::Real B, core::Real C, core::Real alpha, core::Real beta, core::Real gamma)

Detailed Description

protocols for folding into density

Author

Frank DiMaio

Macro Definition Documentation

#define DEG2RAD   0.0174532925199433

Referenced by protocols::cryst::getVolume(), and protocols::cryst::WallpaperGroup::set_parameters().

#define RAD2DEG   57.295779513082323

Referenced by protocols::cryst::UpdateCrystInfo::apply().