protocols::loop_grower::LoopPartialSolutionStore Member List

This is the complete list of members for protocols::loop_grower::LoopPartialSolutionStore, including all inherited members.

asymmdump_	protocols::loop_grower::LoopPartialSolutionStore	private
beamscorecutoff_	protocols::loop_grower::LoopPartialSolutionStore	private
checksymm_	protocols::loop_grower::LoopPartialSolutionStore	private
clear()	protocols::loop_grower::LoopPartialSolutionStore	inline
cluster_check(LoopPartialSolution nearnativelps, core::pose::Pose &pose, core::Size total_lower, core::Size lower_res, core::Size upper_res)	protocols::loop_grower::LoopPartialSolutionStore
clustercheck_	protocols::loop_grower::LoopPartialSolutionStore	private
cutpoint_	protocols::loop_grower::LoopPartialSolutionStore	private
diversityfilter(core::Size maxbeamsize, core::Size total_lower)	protocols::loop_grower::LoopPartialSolutionStore
dump_beam_	protocols::loop_grower::LoopPartialSolutionStore	private
dump_errors_	protocols::loop_grower::LoopPartialSolutionStore	private
dumpfinalbeam_	protocols::loop_grower::LoopPartialSolutionStore	private
fafilter_	protocols::loop_grower::LoopPartialSolutionStore	private
filter(core::pose::Pose &pose, core::Size maxbeam, core::Size total_lower, core::Size lower_res, core::Size upper_res, core::Size cycle)	protocols::loop_grower::LoopPartialSolutionStore
filteronly_solutions_	protocols::loop_grower::LoopPartialSolutionStore	private
filterprevious(LoopPartialSolution lps, core::Size total_lower, core::Size fragmelt, core::Real rmscutoff, core::Size masterbeamwidth)	protocols::loop_grower::LoopPartialSolutionStore
filterprevious_	protocols::loop_grower::LoopPartialSolutionStore	private
fragmelt_	protocols::loop_grower::LoopPartialSolutionStore	private
get_cutpoint()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_filteronly_solutions()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_lower_fasta()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_lower_pose()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_solutions()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_upper_fasta()	protocols::loop_grower::LoopPartialSolutionStore	inline
get_upper_pose()	protocols::loop_grower::LoopPartialSolutionStore	inline
is_empty()	protocols::loop_grower::LoopPartialSolutionStore	inline
LoopPartialSolutionStore()=default	protocols::loop_grower::LoopPartialSolutionStore
LoopPartialSolutionStore(core::Size N, core::Real rmscutoff, core::Size master_beam_width, core::Real master_beam_cutoff)	protocols::loop_grower::LoopPartialSolutionStore	inline
lower_fasta_	protocols::loop_grower::LoopPartialSolutionStore	private
lower_pose_	protocols::loop_grower::LoopPartialSolutionStore	private
master_beam_cutoff_	protocols::loop_grower::LoopPartialSolutionStore	private
master_beam_width_	protocols::loop_grower::LoopPartialSolutionStore	private
maxelts_	protocols::loop_grower::LoopPartialSolutionStore	private
old_solutions_	protocols::loop_grower::LoopPartialSolutionStore	private
operator[](core::Size solutions_index)	protocols::loop_grower::LoopPartialSolutionStore	inline
parallelcount_	protocols::loop_grower::LoopPartialSolutionStore	private
parametercheck_filter(core::pose::Pose &pose, core::Size fragmelt, core::Size total_lower, core::Size lower_res, core::Size upper_res, core::Size rmswindow, bool dump_beam, core::Size &totalreqbeam, core::Size &totalreqmaxbeam, core::Real &totalreqscorecut, bool writebeams, core::Size cycle, core::Size parallelcount)	protocols::loop_grower::LoopPartialSolutionStore
push(core::pose::Pose &pose, LoopPartialSolution const &new_entry, core::Size fragmelt, core::Real beamscorecutoff, core::Size total_lower, bool lower, bool dump_errors, core::Real RMS, core::Size lower_res, core::Size upper_res)	protocols::loop_grower::LoopPartialSolutionStore
rank_	protocols::loop_grower::LoopPartialSolutionStore	private
report_rms_and_scores(core::Size rangelo, core::Size rangehi)	protocols::loop_grower::LoopPartialSolutionStore
rmscutoff_	protocols::loop_grower::LoopPartialSolutionStore	private
rmswindow_	protocols::loop_grower::LoopPartialSolutionStore	private
samplesheets_	protocols::loop_grower::LoopPartialSolutionStore	private
set_cutpoint(core::Size cutpoint)	protocols::loop_grower::LoopPartialSolutionStore	inline
set_fastas(core::Size lower, core::Size upper)	protocols::loop_grower::LoopPartialSolutionStore	inline
set_filterprevious(bool filterprevious)	protocols::loop_grower::LoopPartialSolutionStore	inline
set_poses(core::Size lower, core::Size upper)	protocols::loop_grower::LoopPartialSolutionStore	inline
setfilterparams(core::Size fragmelt, core::Size rmswindow, core::Size parallelcount, core::Real beamscorecutoff, bool dump_errors, bool dump_beam, bool writebeams, bool clustercheck, bool fafilter, bool samplesheets, bool filterprevious, bool checksymm, bool asymmdump, bool dumpfinalbeam)	protocols::loop_grower::LoopPartialSolutionStore	inline
size()	protocols::loop_grower::LoopPartialSolutionStore	inline
skeleton_filter(core::pose::Pose &pose, DensSkeleton &skeleton, core::Size start_res, core::Size stop_res, core::Size lower_term, core::Size res_gap)	protocols::loop_grower::LoopPartialSolutionStore
solutions_	protocols::loop_grower::LoopPartialSolutionStore	private
sort()	protocols::loop_grower::LoopPartialSolutionStore	inline
sortrms()	protocols::loop_grower::LoopPartialSolutionStore	inline
store(LoopPartialSolution const &new_entry)	protocols::loop_grower::LoopPartialSolutionStore	inline
store_filteronly_solutions(utility::vector1< LoopPartialSolution > filteronly)	protocols::loop_grower::LoopPartialSolutionStore	inline
upper_fasta_	protocols::loop_grower::LoopPartialSolutionStore	private
upper_pose_	protocols::loop_grower::LoopPartialSolutionStore	private
writebeams_	protocols::loop_grower::LoopPartialSolutionStore	private
writelpsstore(core::Size loopid, core::Size jobid)	protocols::loop_grower::LoopPartialSolutionStore
zscoretransform()	protocols::loop_grower::LoopPartialSolutionStore