protocols::denovo_design::components::StructureDataPerturber Class Reference

Classes for altering StructureData objects on the fly. More...

#include <StructureDataPerturber.hh>

Inheritance diagram for protocols::denovo_design::components::StructureDataPerturber:

Public Types
typedef SegmentCOPs	Permutation
typedef utility::vector1 < Permutation >	Permutations
typedef EnumeratedVectorSelector < Permutation >	PermutationSelector

Public Member Functions
	StructureDataPerturber ()
virtual	~StructureDataPerturber ()
	Destructor. More...
virtual StructureDataPerturberOP	clone () const =0
virtual void	parse_my_tag (utility::tag::Tag const &tag, basic::datacache::DataMap &data)=0
virtual Permutations	enumerate (StructureData const &sd) const =0
void	apply (StructureData &sd)
virtual void	set_ignore_segments (SegmentNameSet const &ignore_set)
bool	ignored (SegmentName const &segment_name) const

Static Public Member Functions
static StructureDataPerturberOP	create (utility::tag::Tag const &tag, basic::datacache::DataMap &data)
	creates a structuredata perturber from a tag More...

Private Member Functions
bool	finished () const
void	replace_segments (StructureData &sd, Permutation const &perm) const
	Replaces the segments in sd with those in perm. More...

Private Attributes
SegmentNameSet	ignore_
PermutationSelector	permutations_

Detailed Description

Classes for altering StructureData objects on the fly.

Member Typedef Documentation

typedef SegmentCOPs protocols::denovo_design::components::StructureDataPerturber::Permutation

typedef utility::vector1< Permutation > protocols::denovo_design::components::StructureDataPerturber::Permutations

typedef EnumeratedVectorSelector< Permutation > protocols::denovo_design::components::StructureDataPerturber::PermutationSelector

Constructor & Destructor Documentation

protocols::denovo_design::components::StructureDataPerturber::StructureDataPerturber

(

)

protocols::denovo_design::components::StructureDataPerturber::~StructureDataPerturber ( )

virtualdefault

Destructor.

Member Function Documentation

void protocols::denovo_design::components::StructureDataPerturber::apply

(

StructureData &

sd

)

References enumerate(), finished(), permutations_, replace_segments(), core::scoring::rg, protocols::denovo_design::components::EnumeratedVectorSelector< T >::select(), and protocols::TR().

virtual StructureDataPerturberOP protocols::denovo_design::components::StructureDataPerturber::clone ( ) const

pure virtual

Implemented in protocols::denovo_design::components::CompoundPerturber, protocols::denovo_design::components::HelixPerturber, protocols::denovo_design::components::ConnectionPerturber, and protocols::denovo_design::components::NullPerturber.

Referenced by protocols::denovo_design::movers::FoldArchitectMover::set_perturber().

StructureDataPerturberOP protocols::denovo_design::components::StructureDataPerturber::create ( utility::tag::Tag const &  tag, basic::datacache::DataMap &  data  )

static

creates a structuredata perturber from a tag

References protocols::denovo_design::components::ConnectionPerturber::class_name(), protocols::denovo_design::components::HelixPerturber::class_name(), and protocols::denovo_design::components::CompoundPerturber::class_name().

Referenced by protocols::denovo_design::components::CompoundPerturber::parse_my_tag(), and protocols::denovo_design::movers::FoldArchitectMover::parse_perturber().

virtual Permutations protocols::denovo_design::components::StructureDataPerturber::enumerate ( StructureData const &  sd ) const

pure virtual

Implemented in protocols::denovo_design::components::CompoundPerturber, protocols::denovo_design::components::HelixPerturber, protocols::denovo_design::components::ConnectionPerturber, and protocols::denovo_design::components::NullPerturber.

Referenced by apply().

bool protocols::denovo_design::components::StructureDataPerturber::finished ( ) const

private

References permutations_.

Referenced by apply().

bool protocols::denovo_design::components::StructureDataPerturber::ignored

(

SegmentName const &

segment_name

)

const

References ignore_.

Referenced by protocols::denovo_design::components::ConnectionPerturber::enumerate(), protocols::denovo_design::components::HelixPerturber::enumerate(), and replace_segments().

virtual void protocols::denovo_design::components::StructureDataPerturber::parse_my_tag ( utility::tag::Tag const &  tag, basic::datacache::DataMap &  data  )

pure virtual

Implemented in protocols::denovo_design::components::CompoundPerturber, protocols::denovo_design::components::HelixPerturber, protocols::denovo_design::components::ConnectionPerturber, and protocols::denovo_design::components::NullPerturber.

void protocols::denovo_design::components::StructureDataPerturber::replace_segments ( StructureData &  sd, Permutation const &  perm  ) const

private

Replaces the segments in sd with those in perm.

References protocols::denovo_design::components::Segment::abego(), protocols::denovo_design::components::Segment::delete_lower_padding(), protocols::denovo_design::components::Segment::delete_upper_padding(), protocols::denovo_design::components::StructureData::has_segment(), ignored(), protocols::denovo_design::components::Segment::lower_padding(), protocols::denovo_design::components::Segment::lower_segment(), protocols::denovo_design::components::Segment::movable_group(), protocols::denovo_design::components::StructureData::replace_segment(), protocols::denovo_design::components::StructureData::segment(), protocols::denovo_design::components::Segment::set_lower_segment(), protocols::denovo_design::components::Segment::set_movable_group(), protocols::denovo_design::components::Segment::set_upper_segment(), protocols::denovo_design::components::Segment::ss(), protocols::TR(), protocols::denovo_design::components::Segment::upper_padding(), and protocols::denovo_design::components::Segment::upper_segment().

Referenced by apply().

void protocols::denovo_design::components::StructureDataPerturber::set_ignore_segments ( SegmentNameSet const &  ignore_set )

virtual

Reimplemented in protocols::denovo_design::components::CompoundPerturber.

References ignore_.

Referenced by protocols::denovo_design::components::CompoundPerturber::set_ignore_segments().

Member Data Documentation

SegmentNameSet protocols::denovo_design::components::StructureDataPerturber::ignore_

private

Referenced by ignored(), and set_ignore_segments().

PermutationSelector protocols::denovo_design::components::StructureDataPerturber::permutations_

private

Referenced by apply(), and finished().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/components/StructureDataPerturber.hh
• src/protocols/denovo_design/components/StructureDataPerturber.cc