protocols::toolbox::ClusterPhilStyle Class Reference

#include <Cluster.hh>

Inheritance diagram for protocols::toolbox::ClusterPhilStyle:

Public Member Functions
	ClusterPhilStyle (core::Size dim, core::Real rad=1.0)
void	compute ()
void	do_clustering ()
void	set_radius (core::Real setting)
void	set_n_max_cluster (core::Size setting)
Public Member Functions inherited from protocols::toolbox::ClusterBase
	ClusterBase (core::Size dim)
core::Real	dist (core::Size i, core::Size j) const
core::Real &	dist (core::Size i, core::Size j)
ObjexxFCL::FArray2D< core::Real > &	distance_matrix ()
ObjexxFCL::FArray2D < core::Real > const &	distance_matrix () const
core::Size	dim () const
void	print_cluster_assignment (std::ostream &out) const
core::Size	size () const
Cluster const &	cluster (core::Size i) const
ClusterList const &	clusterlist () const
void	sort_each_group_by_energy (utility::vector1< core::Real > all_energies, bool keep_center=false)
void	limit_groupsize (core::Size limit)
void	print_summary (utility::vector1< std::string > tags, utility::vector1< core::Real > all_energies)
void	show (std::ostream &out) const
void	read (std::istream &in)

Private Attributes
core::Real	cluster_radius_
core::Size	n_max_cluster_

Additional Inherited Members
Public Types inherited from protocols::toolbox::ClusterBase
typedef std::deque< core::Size >	Cluster
typedef utility::vector1< Cluster >	ClusterList
typedef Cluster::const_iterator	IntraClusterIterator
typedef ClusterList::const_iterator	ClusterIterator
Protected Attributes inherited from protocols::toolbox::ClusterBase
ClusterList	clusterlist_
ObjexxFCL::FArray2D< core::Real >	distance_
core::Size	dim_

Constructor & Destructor Documentation

protocols::toolbox::ClusterPhilStyle::ClusterPhilStyle ( core::Size  dim, core::Real  rad = 1.0  )

inline

Member Function Documentation

void protocols::toolbox::ClusterPhilStyle::compute

(

)

References cluster_radius_, protocols::toolbox::ClusterBase::clusterlist_, protocols::toolbox::ClusterBase::dim(), protocols::toolbox::ClusterBase::dist(), n_max_cluster_, and core::scoring::rms.

Referenced by do_clustering().

void protocols::toolbox::ClusterPhilStyle::do_clustering ( )

inline

References compute().

void protocols::toolbox::ClusterPhilStyle::set_n_max_cluster ( core::Size  setting )

inline

References n_max_cluster_.

void protocols::toolbox::ClusterPhilStyle::set_radius ( core::Real  setting )

inline

References cluster_radius_.

Member Data Documentation

core::Real protocols::toolbox::ClusterPhilStyle::cluster_radius_

private

Referenced by compute(), and set_radius().

core::Size protocols::toolbox::ClusterPhilStyle::n_max_cluster_

private

Referenced by compute(), and set_n_max_cluster().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/Cluster.hh
• src/protocols/toolbox/Cluster.cc