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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for core::pack::palette::PackerPalette, including all inherited members.
| add_base_residue_type(std::string const &name, core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| add_base_residue_types_by_properties(utility::vector1< core::chemical::ResidueProperty > const &properties, core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| add_residue_types_to_list(utility::vector1< core::chemical::ResidueTypeCOP > const &types_to_add, std::list< core::chemical::ResidueTypeCOP > &residue_type_list, core::Size const seqpos) const | core::pack::palette::PackerPalette | private |
| aramid_backbones_are_compatible(core::chemical::ResidueType const &existing_type, core::chemical::ResidueType const &candidate_type) const | core::pack::palette::PackerPalette | private |
| base_list_cache_ | core::pack::palette::PackerPalette | mutableprivate |
| clone() const =0 | core::pack::palette::PackerPalette | pure virtual |
| decide_what_to_do_with_base_type(core::conformation::Residue const &existing_residue, core::chemical::ResidueTypeSetCOP restypeset, std::list< core::chemical::ResidueTypeCOP > &residue_type_list, core::chemical::ResidueTypeCOP const &candidate_base_type, bool &existing_type_processed) const | core::pack::palette::PackerPalette | private |
| decide_what_to_do_with_existing_type(core::conformation::Residue const &existing_residue, core::chemical::ResidueTypeSetCOP restypeset, std::list< core::chemical::ResidueTypeCOP > &residue_type_list) const | core::pack::palette::PackerPalette | private |
| get_base_names_by_properties(core::chemical::ResidueTypeSet const &restypeset, utility::vector1< core::chemical::ResidueProperty > const &properties) const | core::pack::palette::PackerPalette | protected |
| get_base_residue_types(core::chemical::ResidueTypeSetCOP const &restypeset) const =0 | core::pack::palette::PackerPalette | protectedpure virtual |
| get_base_residue_types_cached(core::chemical::ResidueTypeSetCOP const &restypeset) const | core::pack::palette::PackerPalette | protected |
| get_base_type_raw_ptr(core::chemical::ResidueTypeCOP const &restype) const | core::pack::palette::PackerPalette | private |
| get_residue_type_cop_with_variant_removed(core::chemical::ResidueTypeCOP const &restype, core::chemical::ResidueTypeSet const &restypeset, core::chemical::VariantType const vartype_to_remove) const | core::pack::palette::PackerPalette | private |
| get_self_ptr() const | core::pack::palette::PackerPalette | inline |
| get_self_ptr() | core::pack::palette::PackerPalette | inline |
| get_types_on_residue(core::conformation::Residue const &residue, utility::vector1< core::chemical::VariantType > const &types, utility::vector1< core::chemical::VariantType > &present_types, utility::vector1< std::string > &present_on_the_fly_types) const | core::pack::palette::PackerPalette | private |
| icoor_05_2009() const | core::pack::palette::PackerPalette | inlineprivate |
| icoor_05_2009_ | core::pack::palette::PackerPalette | private |
| initialize_non_terminal_types() | core::pack::palette::PackerPalette | private |
| initialize_residue_level_task(core::conformation::Residue const &existing_residue, core::chemical::ResidueTypeSetCOP restypeset, std::list< chemical::ResidueTypeCOP > &residue_type_list) const | core::pack::palette::PackerPalette | |
| initialize_special_behaviours() | core::pack::palette::PackerPalette | private |
| name() const =0 | core::pack::palette::PackerPalette | pure virtual |
| non_terminal_types_ | core::pack::palette::PackerPalette | private |
| PackerPalette() | core::pack::palette::PackerPalette | |
| parse_my_tag(utility::tag::TagCOP const &tag, basic::datacache::DataMap const &datamap) | core::pack::palette::PackerPalette | virtual |
| pH_mode() const | core::pack::palette::PackerPalette | inlineprivate |
| pH_mode_ | core::pack::palette::PackerPalette | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::pack::palette::PackerPalette | virtual |
| restore_pre_talaris_behaviour() const | core::pack::palette::PackerPalette | inlineprivate |
| restore_pre_talaris_behaviour_ | core::pack::palette::PackerPalette | private |
| saccharide_backbones_are_compatible(chemical::ResidueType const &existing_type, chemical::ResidueType const &candidate_type) const | core::pack::palette::PackerPalette | private |
| set_force_existing_base_type(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_only_design_polymer_residues(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_only_design_protein_peptoid_dna_saccharide(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_up_default_base_types(core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| set_up_default_special_behaviours() | core::pack::palette::PackerPalette | |
| set_up_expanded_base_types(core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| special_behaviours_ | core::pack::palette::PackerPalette | private |
| terminal_types_ | core::pack::palette::PackerPalette | private |
| variant_type_names_ | core::pack::palette::PackerPalette | private |
| ~PackerPalette() override | core::pack::palette::PackerPalette |
1.8.7