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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for protocols::cyclic_peptide::crosslinker::TMA_Helper, including all inherited members.
| add_linker_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_linker_bonds_asymmetric(core::pose::Pose &pose, utility::vector1< core::Size > const &res_indices, core::Size const linker_index) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_linker_bonds_symmetric(core::pose::Pose &pose, core::Size const res1, core::Size const linker_index1, core::Size const linker_index2) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_linker_constraints_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_linker_constraints_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const linker_was_added) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_linker_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| add_sidechain_conjugation(core::pose::Pose &pose, core::Size const position) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| adds_crosslinker_residue() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | inlinevirtual |
| CrosslinkerMoverHelper() | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| CrosslinkerMoverHelper(CrosslinkerMoverHelper const &src) | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| filter_by_constraints_energy(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, bool const symmetric, bool const linker_was_added, core::Real const &filter_multiplier) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | protectedvirtual |
| filter_by_constraints_energy_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| filter_by_constraints_energy_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, bool const linker_was_added, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| filter_by_sidechain_distance_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| filter_by_sidechain_distance_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| get_last_sidechain_carbon_name(core::chemical::ResidueType const &type) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| get_linker_index_asymmetric(core::pose::Pose const &pose, utility::vector1< core::Size > const &res_indices) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| get_linker_indices_symmetric(core::pose::Pose const &pose, utility::vector1< core::Size > const &res_indices, utility::vector1< core::Size > &linker_indices) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| get_max_sidechain_length(core::chemical::ResidueType const &restype) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| get_sidechain_amide_name(core::chemical::ResidueType const &type) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| get_sidechain_connect_index(core::conformation::Residue const &res) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| get_sidechain_indices(core::select::residue_selector::ResidueSubset const &selection, utility::vector1< core::Size > &res_indices) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| helper_adds_linker_residue() const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | inlinevirtual |
| is_allowed_residue_type(core::chemical::ResidueType const &type) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| list_allowed_residue_types() const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| place_tma_asymmetric(core::pose::Pose &tma_pose, core::pose::Pose const &pose, core::Size const res1, core::Size const res2, core::Size const res3) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| place_tma_symmetric(core::pose::Pose &symm_pose, core::pose::Pose const &asymm_pose) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| post_relax_round_update_steps(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const whole_structure, bool const symmetric, bool const linker_was_added) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| pre_relax_round_update_steps(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const whole_structure, bool const symmetric, bool const linker_was_added) const override | protocols::cyclic_peptide::crosslinker::TMA_Helper | virtual |
| selection_is_symmetric(core::select::residue_selector::ResidueSubset const &selection, core::pose::Pose const &pose, core::Size const expected_subunit_count) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| set_symmetry(char const symm_type_in, core::Size const symm_count_in) | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| symm_count() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | inlineprotected |
| symm_subunits_expected() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| symm_type() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | inlineprotected |
| TMA_Helper() | protocols::cyclic_peptide::crosslinker::TMA_Helper | |
| TMA_Helper(TMA_Helper const &src) | protocols::cyclic_peptide::crosslinker::TMA_Helper | |
| update_tma_amide_bond_dependent_atoms(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const symmetric, bool const tma_was_added) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| update_tma_amide_bond_dependent_atoms_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| update_tma_amide_bond_dependent_atoms_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const tma_was_added) const | protocols::cyclic_peptide::crosslinker::TMA_Helper | private |
| ~CrosslinkerMoverHelper() override | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| ~TMA_Helper() override | protocols::cyclic_peptide::crosslinker::TMA_Helper |
1.8.7